Gene detail

Gene detail information of Glyur001600s00030348.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26200.1	3.00E-161	1-amino-cyclopropane-1-carboxylate synthase 7
NR	XP_003530192.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 7-like [Glycine max]
COG	YP_004582080.1	4.00E-48	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q9STR4\|1A17_ARATH	0	1-aminocyclopropane-1-carboxylate synthase 7
trEMBL	tr\|I1KJU2\|I1KJU2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G15380.1}

Sequence

Transcript Sequence

>Glyur001600s00030348.1
ATGGGTATTGAGATTGAGCAACCTTGTGTGGTGGAGCTTTCAAAAGTTGCAGTCTCTGAAACTCATGGAGAGAATTCTCCTTATTTTGCTGGGTGGAAAGCCTATGATGAAAACCCCTATGATGAATTCACTAACCCCTCTGGNTACTTGGAAGAGCATTCAGAGGCATCTAACTGGGGGAAAGGTGGAGCCGCTGGATTCAGAGAGAATGCATTGTTTCAAGACTATCATGGGCTTGTATCCTTCAGAAAGGCAATGACAAGCTTCATGGAAAAGATAAGAGGAGGGAGAGCTAAGTTTGACCCTCAAAGAATGGTCCTCACTGCTGGTGCCACTGCTGCCAANGAGCTCTTAACCTTCATTCTAGCTAACCCGGGAGATACTTTACTTGTTCCTACCCCTTACTATCCTGGGTGGAGAACTGGGGTGAACATAGTTCCAATCCANTGTGACAGCTCAAACAATTTCCAAATCACCCGTGAGGCTCTTGAGGCTGCATACAAAGAAGCAGAATCAATGAACACAAGAGTAAAGGGTGTTCTCATCACCAACCCTTCAAACCCATTAGGCATTACCATTCAGCGCTCAGTCCTTGAGGACATCCTCGACTTCGTGACCCAAAAGAACATCCACCTCGTCTCAGACGAAATCTACTCTGGCTCTGTCTTCTCCTCCACAGAGTTTACAAGCGTGGCAGAGATTCTCGAGGCCCGTCAATACAAAGAAGCAGAAAGAGTCCACATTGTCTATAGCCTCTCCAAGGATCTTGGCCTTCCCGGTTTCAGAGTTGTGACCACAGCTAGGAGGATGTCAAGTTTCACACTAATATCCTCTCAGACACAGCACTTGTTGGCTTGTATGTTATCAGATGAAGAGTTCACTGAGAACTACATTGAGACAAACAGGGTGAGGCTGAGGAAGAGGTACAATATGATCATTGATGGGTTGAGGAGTGCTGGGATTGAGTGCTTAAAGGGAAATGCAGGGTTGTTTTGCTGGATGAATATGAGTCCACTGTTGGAGAATAATCCAACAAGGGAAGGTGAATTGGAGCTTTGGAATGATATTCTGCATGAAGTGAAGCTCAATATCTCTCCTGGGTCTTCTTGCCATTGCTCTGAACCGGGTTGGTTCAGGGTCTGCTTTGCAAATATGAGTGAGAACACGCTCGAGATTGCACTCCAAAGAATACGTCACTTCATGGAAAGACAAAACAATTACAAAATGAATACACAAATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01600	25174	27742	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01762	ACS	EC:4.4.1.14	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001600s00030348.1	PF00155.16	Aminotran_1_2	59	397	5.30E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.029
SRR1783600	control	0.056
SRR1783602	moderate drought stress	0.343
SRR1811619	moderate drought stress	0.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.170
DRR006520	Root Summer glycyrrhizin high producing strain	0.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.088
DRR006522	Root Winter glycyrrhizin high producing strain	0.030
DRR006523	Root Summer glycyrrhizin low producing strain	0.355
DRR006524	Root Summer glycyrrhizin low producing strain	0.278
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.617
SRR2868004	Drought Stress (root)	4.634
SRR2967015	Control (root)	8.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.457
SRR9715740	Leaf	0.046
SRR9715741	Leaf	0.250
SRR9715739	Root	2.564
SRR9715742	Root	6.457
SRR9715743	Root	5.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.768
SRR8749028	MeJA induced 9h	5.394
SRR8749029	MeJA induced 9h	4.674
SRR8749030	Uninduced	27.901
SRR8749031	Uninduced	2.517
SRR8749032	Uninduced	2.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.797
SRR8400027	Control - Root	3.738