Gene detail

Gene detail information of Glyur001595s00039155

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15180.1	4.00E-107	ARM repeat superfamily protein
NR	XP_003527227.1	0	PREDICTED: uncharacterized protein LOC100785671 [Glycine max]
trEMBL	tr\|I1KDR0\|I1KDR0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G35680.1}

Sequence

Transcript Sequence

>Glyur001595s00039155.1
AGACTTGGGTGTGTCACACACGCAGCCATGGACGAGGAGTTCTCCATCGACGACCCATCTCAGCTCCTCGAAGCAGCTTCCGATTTCGCCCATTACCCTGGTGTGCAAGGTGATGATTCCNCCAGGGACTTTCTCAATCGCTTCCCTCTCCCACTCTTAATCAATGCATTGCAGACTCAATCTGATGTACCTGGCCTAGAGAGTACTCTAGTTGCATGCCTTGAAAGGTTATTCAAAACAAAGTTGGGTGCTTCTTTGATTCCACAGTATATGCCATTTGTTCAAGTTGGTCTGCTGGCAGATTCTCAAGCAGTCAGATCCTTAGCATGCAAAACAGTTACTTGCCTCCTAGAGAATCTGGACAATGATTATAAAGTTGCTGCTCATCTTATTAGAGAGNTCAACATATATCCTCTTCTCCTTGATTGCCTTATCAATGGGAATGAGCAAGTGGCAGCTGCGGCAATGGATGCAATAAAAAAGTTAGCTGGTTTTCCTGAAGGCATGGGCCGNGTTCGGGTATTGGCTTTAGTTGTCAAGCTTTTTTCTGTATCTAGGTCAGCAGCATCTGCCATTTACAATTTAAATCTNCTTAAACTGTTGGAAGCAGAAATCAGAAATGCAGATGATACCCTTGTAACTTTAAGTGTTTTGGAGCTTCTATATGAGTTAGCAGAGGTTGAGCATGGTACAGAATTTTTGTCAAAGACTAGCCTCCTTCAATTGCTTTCATCTATAATTAGCAACAATTCCATGGAATCAATTTTAAGATCAAGAGCAATGATGACAAGTGGAAGGCTACTGTCCAAGGAAATTGTGCTAAAATTGTTATTTCATCTATTGATGATAGACTTCAGTCCTTGGAACCTTCAGATAGAGATGAATGTGAAACTGCACTTGAATCATTGGGTCGCTGCATTGCATGCTCTTGGAAACATCTCGGGAGAAACCAGATCCCAGAATAACATCATACTCAATGCTGAAGCAGAAGAAAACCTGCGACGCTTGGTNTATGAAACAGCATCCAGGAGCTCAAAGCTGACACCCGGGGGTCTCTTTCTGTCAGTTCTACAGCAGGATTCAGAAATCCGTATAGCGGGCTATAGAATGATAACTGGATTGGTGGCTCGACCATGGTGCTTGATGGAGATNTGCTCAAAACAAGAGATTATAAATATAGTGACCGACCCAAGTACTGAAACCACAAAAATAGGTATGGAAGCTAGATATAACTGCTGCAAGGNGATACACAAATCACTGACTCTGTCTAGTAGAGTTTCTGCTGATCCTGCTTTTGCGGGAATAGCTGCAAAGCTGCAGGAAGCAGTAGAAATGGGTCCATATCTTGTTAGAAAGCATGTTGAAGCTCAACCTATTTTAAGTGTTGAAAGGTGCAAGATATTTAATATAAAAACCATTCATTGGTCCGATCCTGCCGTTTTCTCGAGTCGGTACCAGTGTTCAATCGCAGCAATGGAGTCGCGTGTAGAAACTTTGGAGGCATCGATGGAGTTCCTCAAGAAATTGGCGTCACAGCACACCAACACTCTAGAGGAATTGAAGGAATCAGTAACCTACCCCAGCGAAGTTCAGAAATTGCTCAAGAAATGGATGGAACATCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01595	34302	57113	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0043248 proteasome assembly

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001595s00039155.1	PF10508.4	Proteasom_PSMB	11	265	5.30E-54
Glyur001595s00039155.1	PF10508.4	Proteasom_PSMB	295	450	5.70E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.298
SRR1783600	control	12.376
SRR1783602	moderate drought stress	10.468
SRR1811619	moderate drought stress	11.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.112
DRR006520	Root Summer glycyrrhizin high producing strain	22.488
DRR006521	Root Winter glycyrrhizin high producing strain	46.655
DRR006522	Root Winter glycyrrhizin high producing strain	45.658
DRR006523	Root Summer glycyrrhizin low producing strain	20.364
DRR006524	Root Summer glycyrrhizin low producing strain	20.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.867
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.494
SRR2868004	Drought Stress (root)	27.657
SRR2967015	Control (root)	23.052

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.972
SRR9715740	Leaf	10.345
SRR9715741	Leaf	6.366
SRR9715739	Root	8.073
SRR9715742	Root	14.062
SRR9715743	Root	11.674

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.914
SRR8749028	MeJA induced 9h	20.080
SRR8749029	MeJA induced 9h	21.680
SRR8749030	Uninduced	16.048
SRR8749031	Uninduced	13.982
SRR8749032	Uninduced	15.765

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.386
SRR8400027	Control - Root	25.148