Gene detail

Gene detail information of Glyur001593s00034421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69550.1	3.00E-22	disease resistance protein (TIR-NBS-LRR class)
NR	KEH40038.1	7.06E-149	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
COG	YP_005082071.1	5.00E-07	outermembrane protein [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-14	TMV resistance protein N
trEMBL	tr\|A0A072VF16\|A0A072VF16_MEDTR	3.00E-149	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH40038.1}

Sequence

Transcript Sequence

>Glyur001593s00034421.1
CTGGTTATTTCATGTTGTGGTAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGGTAAACTTAAAATCCTGCGTGCTAATAGTTGCCATCAGCTTAAGAGTTTTCCACCCCTCAAGTTGGCCTCTCTTGAAGAACTGGTTATTTCATATTGTGATAGTCTTGAGAGTTTTCCACCCGTAGTGGATGGGTTGCTGGATAAACTTAAAATCTTGCATGCTAACGGTTGCCAACAACTTAAGAGTTTTCCACCCCTCAAGTTGGCATCTCTTGAAGAACTGGTTATTTCATGTTGTGATAGTCTTGAGAGTTTTCCACCTGTGCTTAAGAGTTTTCCACCCCTCAAGTTGGCCTCTCTTGAAGAACTGGATATTTCATGTTGTGATAGTCTTGAGAGTTTTCCACTCGTGGTGGATGGGTTACCAGGTAAACTTAAAATCTTGAGTGTTTTTGGTTGTAGTAGGCTCAGAAGTGTTCCACCTCTCAATTTGCCTTTGCTTAAACAATTCAATCTTTCAAATTGTGATAATCTTGAGAGTTTTCCAGAAATATTAGGAGAGATGGAAAATATAATACAACTTCAGTTGGGGAAGATTCCAATAAAAGAATTGCCGTTTTCATTTCGAAACTTCACTCAGATTCAAAGATTATATCTGAGTCGTTGTGGAATTACTTGGTTACCAAGTAGCATTGTCATGATGTCAAAACTGGTTGGGATTACCATTGATTACGGGGGATGGCTACTCCCAAAACAGGGCGTGGGTGAAGAAAAGTGGTTTGCTAATGTGAAAGAATTAGACCTAAGTGGGAGTAAATTTACAACTCTTCCTGAATGCATCAAAAAATGTCCGTTTTTATGGAAGCTTATCTTGAAGGATTGCGAGGAACTTCAGGAAATTAAAGGGATCCCGCCAAGCTTAAAAACTCTATCTGCATTGAACTGCAAACATTTGACTTTGTCTAGTAAAAACAAGTTACTGAGTCAGGAACTGCATGAGGCTGGAAACACTTGGTTTAGTTTGCCAGGATCAGAGATTCCGGAATGGTTTGAGCACCAATGCATGCAAGGAGAATCATTTTCTTTCTGGTTTCGTAACAAGTGCCCTGTCATAGCTCTCTGTGTTGTTTCTTTGTTGACATGGTATGAATCTGAATCTCCTCTTGTAGGAGTGCTCACCACTCGTGGCACCTCTATAAATGCTTCCCTGGATTACACTGAGAGATGTCTTAAGCAGGAAAAAACATATCATTTACATATTTTTAATATGCAATCGGAAGATATCATGCTGAGAAAAGAACAAAATATGTGGACCCATGCAGAGGTTCGACTTGAATTCACATTCCAGAAAATAGGAATCCATGTATTGAATGAGATACGTAACATGGAGGATATTCGATTCACCAATCCAGAGAATGGTGTACTCTGAGTCGTTACTCTCTCAAGCATTGATTCTGATGTAGATAATTGTGACAGGTAGAAGGAGCCTTGGTCACTCTTTTGAAGAAACCAACGGATCATCTAGTTGGTTTAAATGCATGGCATAGATTGCTTGATGAAGTTAATGTGATTTTCTCTATTTCATTCTGACAGATGAACTCCAATCACCAAAGAACTCTTGCAAAAGATAGTTATGAACTGTTTGGGTTTGTTGAGATTAGTATGCTCTGGTTCTACTGGCGATTTATATGCTGTGATGAAAGATTCATATGTGGGGAAGCCATCCGGTTGCAATGACGGGAGGTTTGAGCAATTCCTTTGCTGCCTTGCTGGTCCTCAGAAAACACGAGAGGCATGGGGCATTGGAGAATCAATGCCAGAATGGAAGGTGTGAGGCATAGGGCAGGGAAGGGGTGGGTCACAGAAACACTTTGGGTGCAGCAAGAAATATGTTGCGGTGAATGGAGTCTTGAATTCACATGGGAATGGGAAAGAGGGCTGAAGATCTGCATCGAAAAATCGATTACAAATGAGAATTGTGGGGAGGGGGGTTGAAGGTGTGAAGCACATATTGGCAGGGAATGGTGGGTTACGGAAACGGCATTACAACAATGCTTTGGGTGTGGTAGGAGAGAATTTGTTGAAAAAGCAACAACAAAAACTGTTAAATTGATAATTATTTGTGATTTTGACGGGAATTGCATACGCTGATGTGGCGATATATAAACACACGCTTTAAAAAATATATATTATAAATAGATGTATAATTCAACGATTAAATAACTCATCCGACGAGTGTAAATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01593	58706	64817	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001593s00034421.1	PF00560.28	LRR_1	120	137	0.68
Glyur001593s00034421.1	PF00560.28	LRR_1	263	283	0.42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.453
SRR1783600	control	4.428
SRR1783602	moderate drought stress	3.157
SRR1811619	moderate drought stress	3.093

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.056
DRR006520	Root Summer glycyrrhizin high producing strain	4.919
DRR006521	Root Winter glycyrrhizin high producing strain	6.188
DRR006522	Root Winter glycyrrhizin high producing strain	5.927
DRR006523	Root Summer glycyrrhizin low producing strain	2.253
DRR006524	Root Summer glycyrrhizin low producing strain	2.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.650
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.693

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.761
SRR2868004	Drought Stress (root)	6.325
SRR2967015	Control (root)	5.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.706
SRR9715740	Leaf	16.317
SRR9715741	Leaf	16.749
SRR9715739	Root	1.015
SRR9715742	Root	8.064
SRR9715743	Root	6.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.597
SRR8749028	MeJA induced 9h	6.412
SRR8749029	MeJA induced 9h	2.597
SRR8749030	Uninduced	3.382
SRR8749031	Uninduced	6.351
SRR8749032	Uninduced	3.920

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.596
SRR8400027	Control - Root	9.624