Gene detail information of Glyur001593s00034419 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10340.1 | 1.00E-30 | light harvesting complex of photosystem II 5 |
| NR | KHN30537.1 | 3.53E-39 | Chlorophyll a-b binding protein CP26, chloroplastic [Glycine soja] |
| Swissprot | tr|Q9XF89|CB5_ARATH | 3.00E-37 | Chlorophyll a-b binding protein CP26, chloroplastic (Precursor) |
| trEMBL | tr|K7KQB7|K7KQB7_SOYBN | 2.00E-39 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G28210.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01593 | 49612 | 49839 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001593s00034419.1 | PF00504.16 | Chloroa_b-bind | 1 | 32 | 8.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.030 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.790 |
| SRR2868004 | Drought Stress (root) | 10.611 |
| SRR2967015 | Control (root) | 3.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.110 |
| SRR8749028 | MeJA induced 9h | 0.281 |
| SRR8749029 | MeJA induced 9h | 0.037 |
| SRR8749030 | Uninduced | 0.388 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.963 |
| SRR8400027 | Control - Root | 0.990 |