Gene detail

Gene detail information of Glyur001593s00034417

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	5.00E-92	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003620132.1	0	Resistance protein [Medicago truncatula]
COG	YP_007742.1	1.00E-13	hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|O23530\|SNC1_ARATH	2.00E-91	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|G7KL74\|G7KL74_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AES76463.2}

Sequence

Transcript Sequence

>Glyur001593s00034417.1
ATGGCTGCGTCGTCGTCATCACCATCCTCTTCCATCACCATTGATGAATTCACCTACGATGTCTTCCTCAGCTTTAGAGGAGAGGATACTCGCCATGGCTTTACTGGCAATCTCTATAAAGCTCTCAAGGACAAGGGAATCCGCACCTTCTTTGATAAGGAAGACATTCCAACGGGGAAGGAAATCACACCATTGCTACTCAAGGCAATCAAACAGTCCAGGACGGCAATAGTTGTGCTCTCTCAGAACTATGCAACTTCATCTTTTTGCTTAAATGAACTTTCCTATATCCTTCATTGCATAAAGGGAAAGGATCGGTTGGTTTGGCCTGTTTTTTATGACATCGACCCTTCTAATGTGAGATGGTTAAAAAGGACCTATGGAGAAGCAATGGATATGCATGAGGCGAGCTCTAGACATAACACGGATACGATGCAGAAATGGAAGAATGCTCTGCAACAAGTGGCTAATTTGTCTGGCACTCATTTCAAGAATGGGAGCGGATATGAATATGAGTTTATTGAACACATAGTTAAAGAAGTCTCAAGAAAGATTAAACCTTTTACTCTATATGTTGCTGATTACCTAGTTGGGCTGGATTCCCAAAAGCAAGATGTAATATCACTTTTGAATGTTGAGTCTGATGATGAAGTCTACATGGCAGGGATCCATGGAATTGGTGGAATAGGTAAAACAACTCTTGCTCTAGAAGTTTATAATTCGATTGCCTGTGAATTCGAAGACGATGTTGACAACATGGAGCAATTACAGGCTGTTGCTGGAAGACCAGAATGGTTTGGTCTTGGAAGTAGAGTCATCATCACAACAAGGGACACAGGCTTGCTGACAAATCATGGGGTTAAAATCAGACATGAGGTGAAGGGGTTGAACAAGGAAGATGCTCTTGCATTGCTTAGATGGAAAGCTTTTAAATCTGACAATGATGGTTCTAGTTGTACGAACGTTTTAAATCTTTTAGAACGTGCAGTAAATATTGCTTCTAGCCTTCCATTGGCTTTAGAAGTAATAGAAGAGAGCTTCAAAACTTTGGATAAAGAAGAGAAGTGTGTTTTTCTTGACATTGCTTGCTGCTTTAAAGGATATAAATGGGCAAAGGTCGAAAAAATACTTCATGCTCATCATGGTGACAGAGCGAAAGGTCACATTAGAGTGTTGGTTGAAAAATCTCTCATAAAGATAAGTGAGTCCGGTAATGTGACACTACATGATTTGATAGAGGACATGGGGAAAGAAATTGTTAGACAAGAATCACTGGAAGATCCCGAAAAACGCAGTAGGTTGTGGCGCCCTAAAGATATAGTTCAAGTTTTAGAAGAAAATACGAAACTTGCCATATGCGAGTTACCCGGTAGTAAATACACATTTATCGGGCTGGGAGACTTATTCAAGAAGAAGGTTGAGAATATGAGAGTTTTAAATTTAGATTACTGTGAATTTTTAACAAAGATATCTGATGTATCCGGTCTCCCAAATTTAGAAGAAATTTCATTTCGAGGTTGCTACAATTTAATTACAATTGATGACTCGATTGGGTTGCTGGGTAAACTTAAAATCTTGCGTGCAAAATATTGCAAGCGGCTTAAGAGTTTTCCACCCCTCAAGTTGGACTCTCTTGAAGAACTGGATATTTCATGGTGTGATAGTCTTGAGAGTTTTCCACCCGTGGTTGATGGGTTGGTGGATAAACTTAAAATCTTGCATGCTAACTGTTGCAAGCAGCTTAAGAGTTTTCCACCCCTCAAGTTGGTCTCTCTTGAAGAACTGGATATTTCATATTGTGGTAGTCTTGAGAGTTTTCCGCCCGTGGTGGATGGGTTGCTGGGCAAACTTAAAATCTTGCGTGCTAATGATTGCAAGCGGCTTAAGAGTTTTCCACCCCTCAAGTTGGACTCTCTTGAAGGACTGGATATTTCATCTTGTGATAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGGTAAACTTAAAATCTTGCGTGCTGGGGGTTGCGAGCAGCTTAAGAGTTTTCCACCCCTCAAGTTGGACTCTCTTGAAGAACTAGATATTTCATTTTGTGATAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGGCAAACTTAAAATCTTGCATGCTAACGGTTGCAAGCAGCTTAAGAGTTTTCCACCCCTCAAGTTAGACTCTCTTGAAGAACTGGAGATTTCATTTTGTGATAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGGTAAACTTAAAATCTTGGACGTTAGCAGTTGCAAGAAGCTCAAGAGTTTTCCACCCCTCAAGTTGGCCTCTCTTGAAGAACTGGATATTTCATCTTGTGATAGTCTTGAGTGTTTTCCACCTGTGGTGGATGGGTTGCTGGGTAAACTTAAAATCTTGCGTGCTAGGGGTTGCAAGCAGCTTAAGAGTTTTCCACCCCTCAAGTTGGCATCTCTAGAAGAACTCGATATTTTTTGTTGTGATAGTCTTGAGATTTTTCCACCCATTGTGGATGGGTTGATATGTAAACTTAAAATCTTGCGTGCTAACGGTTGTCAGCAGCTTAAGAGTTTTCCACCCCTCAAGTTGGCCTCTCTTGAAGAACTGGATATTTCATATTGTGATAGTCTTGAGAGTTTTCCACCGGTTGTGGATAGGGAATGGCTATTCCCAAACCAGGACGAGGGTGAAGAGAAGGTGAGCCCAATGCAATTTTCACAAGTAGAGCTTCTTCTCCGGAACTGCAACCTTTCAGACGAGTCCTTGGCAATATTTCTCAAGTGGTTTGCCAATGTGAAAGAATTAGACCTAAGTGGGAGTAAATTTACATCTCTTCCTAAATGCATCGAAAAATGTCAGTTTTTATGGAAGCTCATCTTGGATGATTGCAAGGAACTTCAAGAAATTAAAGGGGAACTGCATGAGGCTGGAAACACTTTGTTTTGTTTGCCAGGAGCAGAGATTCCGGAGTGGTTTGAGCATCAATGCATGGAACTGATGGAAGGACGATCAATTTCTTTCTGGTTTCGTAACAAGTTCCCTGACATAGTTCTCTGTTTTGTTTCTTCTGAATTACTTAATTATGTTGGAGTGATCATCAATGGCACTTTGAAGAGGAAGGCTGAGAGCTGGATCTTGTTGTGGTTGGCTAGTGGTAGAAGGAGCCTTGGTCAGTCTTTTGATGAAACCAACGAAAATCTAGTTGGTTTAAATGAATGGCATAGAAAATCTCCATCAGTATCATTGCTTGATGAGGCTAATGAGATTATGATGCAAAAAGATTCAGGTCCCAAGTCCCCCTTCATCAGTAATGAGGAGCTTGAAGAAAAAGTCAATGTCATTGAAGCTGATATCTTTGCTTTTGAATCATAAAAGTAAAGGGCTTGTGATCAGAGAAAGAGATGTCCTTAAGGTAGAAAAGACCCCTTATAGCTCACAGAGAAGCTGTGGGAAACAAACACCTAATGTGCAACACATGCACATCATTTGGAAATGGAAACACAGATAGGAATCAAAACTGAATTGTCAGAAACTGTGGAAAATTTAAGAAGGTTGTTGCAGACTGAGATGTATAGGAATTCTAGTAGAATTTTGAACATGGACAAAATTACTTGGTCTATGATATAGTACAGTTAAATTATTTTCATTTCAAATTGATGTCCA

Protein Sequence

>Glyur001593s00034417.1
MAASSSSPSSSITIDEFTYDVFLSFRGEDTRHGFTGNLYKALKDKGIRTFFDKEDIPTGKEITPLLLKAIKQSRTAIVVLSQNYATSSFCLNELSYILHCIKGKDRLVWPVFYDIDPSNVRWLKRTYGEAMDMHEASSRHNTDTMQKWKNALQQVANLSGTHFKNGSGYEYEFIEHIVKEVSRKIKPFTLYVADYLVGLDSQKQDVISLLNVESDDEVYMAGIHGIGGIGKTTLALEVYNSIACEFEDDVDNMEQLQAVAGRPEWFGLGSRVIITTRDTGLLTNHGVKIRHEVKGLNKEDALALLRWKAFKSDNDGSSCTNVLNLLERAVNIASSLPLALEVIEESFKTLDKEEKCVFLDIACCFKGYKWAKVEKILHAHHGDRAKGHIRVLVEKSLIKISESGNVTLHDLIEDMGKEIVRQESLEDPEKRSRLWRPKDIVQVLEENTKLAICELPGSKYTFIGLGDLFKKKVENMRVLNLDYCEFLTKISDVSGLPNLEEISFRGCYNLITIDDSIGLLGKLKILRAKYCKRLKSFPPLKLDSLEELDISWCDSLESFPPVVDGLVDKLKILHANCCKQLKSFPPLKLVSLEELDISYCGSLESFPPVVDGLLGKLKILRANDCKRLKSFPPLKLDSLEGLDISSCDSLESFPPVVDGLLGKLKILRAGGCEQLKSFPPLKLDSLEELDISFCDSLESFPPVVDGLLGKLKILHANGCKQLKSFPPLKLDSLEELEISFCDSLESFPPVVDGLLGKLKILDVSSCKKLKSFPPLKLASLEELDISSCDSLECFPPVVDGLLGKLKILRARGCKQLKSFPPLKLASLEELDIFCCDSLEIFPPIVDGLICKLKILRANGCQQLKSFPPLKLASLEELDISYCDSLESFPPVVDREWLFPNQDEGEEKVSPMQFSQVELLLRNCNLSDESLAIFLKWFANVKELDLSGSKFTSLPKCIEKCQFLWKLILDDCKELQEIKGELHEAGNTLFCLPGAEIPEWFEHQCMELMEGRSISFWFRNKFPDIVLCFVSSELLNYVGVIINGTLKRKAESWILLWLASGRRSLGQSFDETNENLVGLNEWHRKSPSVSLLDEANEIMMQKDSGPKSPFISNEELEEKVNVIEADIFAFES

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01593	30928	37917	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001593s00034417.1	PF01582.15	TIR	21	154	8.60E-32
Glyur001593s00034417.1	PF00931.17	NB-ARC	202	241	1.10E-05
Glyur001593s00034417.1	PF00931.17	NB-ARC	248	348	1.40E-09
Glyur001593s00034417.1	PF13504.1	LRR_7	544	560	5.4
Glyur001593s00034417.1	PF00560.28	LRR_1	591	608	0.67
Glyur001593s00034417.1	PF00560.28	LRR_1	685	702	1.1
Glyur001593s00034417.1	PF00560.28	LRR_1	779	796	1.1
Glyur001593s00034417.1	PF00560.28	LRR_1	873	890	0.98
Glyur001593s00034417.1	PF00560.28	LRR_1	939	959	1.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.120
SRR1783600	control	2.122
SRR1783602	moderate drought stress	3.987
SRR1811619	moderate drought stress	3.935

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.785
DRR006520	Root Summer glycyrrhizin high producing strain	0.978
DRR006521	Root Winter glycyrrhizin high producing strain	0.963
DRR006522	Root Winter glycyrrhizin high producing strain	0.994
DRR006523	Root Summer glycyrrhizin low producing strain	0.162
DRR006524	Root Summer glycyrrhizin low producing strain	0.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.680
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.197
SRR2868004	Drought Stress (root)	1.857
SRR2967015	Control (root)	3.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.432
SRR9715740	Leaf	11.813
SRR9715741	Leaf	12.574
SRR9715739	Root	0.417
SRR9715742	Root	4.716
SRR9715743	Root	4.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.278
SRR8749028	MeJA induced 9h	2.713
SRR8749029	MeJA induced 9h	1.638
SRR8749030	Uninduced	1.442
SRR8749031	Uninduced	2.130
SRR8749032	Uninduced	1.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.445
SRR8400027	Control - Root	7.889