Gene detail information of Glyur001593s00034415 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 7.00E-18 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | AGT79953.1 | 7.79E-34 | NBS-LRR protein FJV-1, partial [Vigna radiata] |
| COG | YP_001869376.1 | 2.00E-06 | hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 3.00E-18 | TMV resistance protein N |
| trEMBL | tr|T1UNP9|T1UNP9_VIGRA | 3.00E-34 | NBS-LRR protein FJV-1 {ECO:0000313|EMBL:AGT79953.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01593 | 20608 | 27263 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001593s00034415.1 | PF00931.17 | NB-ARC | 1 | 101 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.754 |
| SRR1783600 | control | 12.843 |
| SRR1783602 | moderate drought stress | 10.208 |
| SRR1811619 | moderate drought stress | 10.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.217 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.164 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.792 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.905 |
| SRR2868004 | Drought Stress (root) | 5.688 |
| SRR2967015 | Control (root) | 6.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.538 |
| SRR9715740 | Leaf | 17.024 |
| SRR9715741 | Leaf | 10.296 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 37.031 |
| SRR9715743 | Root | 32.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.330 |
| SRR8749028 | MeJA induced 9h | 5.519 |
| SRR8749029 | MeJA induced 9h | 3.049 |
| SRR8749030 | Uninduced | 1.412 |
| SRR8749031 | Uninduced | 2.413 |
| SRR8749032 | Uninduced | 1.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.448 |
| SRR8400027 | Control - Root | 21.677 |