Gene detail information of Glyur001589s00037674 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14860.1 | 7.00E-34 | nudix hydrolase homolog 18 |
| NR | XP_003630930.1 | 1.83E-59 | Nudix hydrolase [Medicago truncatula] |
| Swissprot | tr|Q9LQU5|NUD18_ARATH | 8.00E-42 | Nudix hydrolase 18, mitochondrial (Precursor) |
| trEMBL | tr|G7LAJ8|G7LAJ8_MEDTR | 7.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK37228.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01589 | 44459 | 45155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001589s00037674.1 | PF00293.23 | NUDIX | 1 | 89 | 4.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.158 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.585 |
| SRR2868004 | Drought Stress (root) | 1.647 |
| SRR2967015 | Control (root) | 1.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.167 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.215 |
| SRR9715739 | Root | 0.197 |
| SRR9715742 | Root | 0.201 |
| SRR9715743 | Root | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.289 |
| SRR8749028 | MeJA induced 9h | 2.010 |
| SRR8749029 | MeJA induced 9h | 4.859 |
| SRR8749030 | Uninduced | 6.250 |
| SRR8749031 | Uninduced | 11.314 |
| SRR8749032 | Uninduced | 5.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.575 |
| SRR8400027 | Control - Root | 0.421 |