Gene detail information of Glyur001588s00036235 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70370.2 | 0 | polygalacturonase 2 |
| NR | XP_004509821.1 | 0 | PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] |
| Swissprot | tr|P92990|JP650_ARATH | 0 | Probable polygalacturonase non-catalytic subunit JP650 (Precursor) |
| trEMBL | tr|A0A072TRI5|A0A072TRI5_MEDTR | 0 | Polygalacturonase non-catalytic protein {ECO:0000313|EMBL:KEH20007.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01588 | 38535 | 40749 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001588s00036235.1 | PF03181.10 | BURP | 423 | 629 | 2.90E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.383 |
| SRR1783600 | control | 4.407 |
| SRR1783602 | moderate drought stress | 5.565 |
| SRR1811619 | moderate drought stress | 5.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.582 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.593 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.460 |
| SRR2868004 | Drought Stress (root) | 64.910 |
| SRR2967015 | Control (root) | 59.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 103.201 |
| SRR9715740 | Leaf | 0.469 |
| SRR9715741 | Leaf | 17.532 |
| SRR9715739 | Root | 4.230 |
| SRR9715742 | Root | 29.031 |
| SRR9715743 | Root | 21.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.378 |
| SRR8749028 | MeJA induced 9h | 0.328 |
| SRR8749029 | MeJA induced 9h | 0.291 |
| SRR8749030 | Uninduced | 0.383 |
| SRR8749031 | Uninduced | 0.154 |
| SRR8749032 | Uninduced | 0.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.743 |
| SRR8400027 | Control - Root | 13.257 |