Gene detail

Gene detail information of Glyur001588s00036234

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60230.1	9.00E-170	Radical SAM superfamily protein
NR	XP_004509827.1	0	PREDICTED: dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum]
COG	YP_848158.1	6.00E-94	radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB]
trEMBL	tr\|I1KXG4\|I1KXG4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G39710.1}

Sequence

Transcript Sequence

>Glyur001588s00036234.1
TGGTGTGAGCACATGAATGAATGAAGCAGCATGAGGAACTGGATGAGCATGGCGATGGGAGTAGCAACAAACTCCACTCTTGTTCTTCTTCTACCCAACAATCATCACAAAACCATNATCCCNTTCTTCTCTCTCACCAAAACGTCGCCGTATCTTACTTCTCCTCGCCGCTTCCTTTCTTCNGCTTCCTCCCTTCCTTCTCTCTCTGCTGCCCACCCCAACTTCTCTGATTTCGGAGATGGTCACGGCGTTGCGGTTTCAACGAAAGGTTCAAAGGTGCTTCTTAAAGGGATGACTTACCCTGAGCTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCCATGATGTTATGGAAGCGNATGTATGGAAACAACATTTGGGCACATCATATTGATGAGTTGGAAGGTTNTTTCTTATTACTATTACTATTGTTTTATAATGCTGGTTTGAACAAGGATTTCAAGAAGATGCTGAGTGAAAATGCAGAGTTCAAGGCGCTCGCTTTGAAAGAAATCCGCACGGCATCTGATGGAACTAGGAAGATTTTATTCACATTGGATGATGGGATGGTCATAGAAACAGTTATCATACCTTGTGATAGAGGCAGGACTACCGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGTTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCCGCTGAAATAGTAGAGCAGACTGTTTTTGCCAGACGGCTTTTCACAAGTGAAGTTGGTTTGATCACCAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGAGCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCGCAGCTCAGACGTTTTCTTCATGAATCCAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACACTTCGGGAGGAGCTTTGCTTCAAACACAACTATAAGGTTCTATTTGAGTATGTAATGCTTGAAGGAATTAATGACAGCGATGAAGATGCAAAGAGGCTTATCAAGCTTGTGAAGGGCATTCCTTGCAAGATCAATCTCATCTCATTCAACCCGCATGGCGGATCCTTCTTTAGACCAACCAAAGAGGAAAGGATGATCGAATTCCGAAACATGCTGGCCGCGGCAGGATGCATAGTCTTTTTACGACTCAGCAGAGGCGATGATCAGATGGCTGCCTGTGGTCAATTAGGCAAGCCTGGCAACATTCAAGCTCCGTTGCTCCGTGTACCTGACCAATTCCAAATGGCAGTTGAAAGTTCAATGTGATTCTTTATAAAGGTTCAGCTACAATTACAAANTTGGTCTAACAGTTATGAGTGAATTCCATAAGGCACTTTTGACTCCATATTGAGAATGGGATTGGTATGGAGTGGCCAATGGCCATGGTTGACTTCATATTGAGATTACAGGACCTGAGAGGTAAACAAAAGATATATGTTTGTTACCAACTTTACAATTGGTTGATTTATTATAAAGGTGAAGGATCCAAGTTCCTGAAGTTTGCAGATTTTTACATGGAATGGCTAGATAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01588	25699	30101	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006364 rRNA processing

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0008173 RNA methyltransferase activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001588s00036234.1	PF04055.16	Radical_SAM	202	371	3.30E-10
Glyur001588s00036234.1	PF13394.1	Fer4_14	206	313	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.421
SRR1783600	control	2.480
SRR1783602	moderate drought stress	5.029
SRR1811619	moderate drought stress	5.088

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.172
DRR006520	Root Summer glycyrrhizin high producing strain	6.242
DRR006521	Root Winter glycyrrhizin high producing strain	11.492
DRR006522	Root Winter glycyrrhizin high producing strain	11.484
DRR006523	Root Summer glycyrrhizin low producing strain	9.596
DRR006524	Root Summer glycyrrhizin low producing strain	9.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.029
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.514

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.246
SRR2868004	Drought Stress (root)	11.890
SRR2967015	Control (root)	16.442

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.232
SRR9715740	Leaf	37.544
SRR9715741	Leaf	27.418
SRR9715739	Root	2.317
SRR9715742	Root	3.652
SRR9715743	Root	4.435

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.721
SRR8749028	MeJA induced 9h	3.768
SRR8749029	MeJA induced 9h	1.402
SRR8749030	Uninduced	1.190
SRR8749031	Uninduced	0.433
SRR8749032	Uninduced	0.817

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.330
SRR8400027	Control - Root	14.758