Gene detail information of Glyur001587s00041639 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02020.1 | 0 | nitroreductase family protein |
| NR | AES87377.2 | 0 | nitroreductase family protein [Medicago truncatula] |
| COG | YP_003797416.1 | 9.00E-148 | hypothetical protein NIDE1759 [Candidatus Nitrospira defluvii] |
| trEMBL | tr|G7JFV6|G7JFV6_MEDTR | 0 | Nitroreductase family protein {ECO:0000313|EMBL:AES87377.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01587 | 323 | 2931 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001587s00041639.1 | PF00881.19 | Nitroreductase | 142 | 295 | 1.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.043 |
| SRR1783600 | control | 2.875 |
| SRR1783602 | moderate drought stress | 4.381 |
| SRR1811619 | moderate drought stress | 4.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.476 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.424 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.108 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.392 |
| SRR2868004 | Drought Stress (root) | 0.782 |
| SRR2967015 | Control (root) | 0.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.306 |
| SRR9715740 | Leaf | 6.849 |
| SRR9715741 | Leaf | 8.514 |
| SRR9715739 | Root | 2.329 |
| SRR9715742 | Root | 4.421 |
| SRR9715743 | Root | 4.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.051 |
| SRR8749028 | MeJA induced 9h | 0.201 |
| SRR8749029 | MeJA induced 9h | 0.109 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.673 |
| SRR8400027 | Control - Root | 7.974 |