Gene detail

Gene detail information of Glyur001582s00029513

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43745.1	0	Protein of unknown function (DUF1012)
NR	XP_004495400.1	0	PREDICTED: putative ion channel POLLUX-like 2-like [Cicer arietinum]
COG	YP_007111138.1	3.00E-41	TrkA-N domain-containing protein [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q940Y9\|POLL2_ARATH	0	Putative ion channel POLLUX-like 2
trEMBL	tr\|I1NIA8\|I1NIA8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G35310.1}

Sequence

Transcript Sequence

>Glyur001582s00029513.1
TGTGTTGTTTTTTCATTTTTTTGGGGAACCATGATTAATGTCATCTTTACGANTTTACCCCTCTCAGTATCGAACATTCGTCACCATAATATCTTNTATGTGTGAATTTGTGAAGTGAGGTCCTCTCTCTCTGACCACATTCACAAGGAGCCATGCTTCTCACTCAGTTGCACATGCACAGCTGTCTCCCATGGATTCCAAGGCACACCAACTTCTCACCATCAATTCCCAACAAGAATTCCAGGAGGTTTATTCCCTCCCACTTCAGCTGGATCAAGTCTTCAGCATTTCATGCGCATGGTCTTGGAGCACACAATGAAGGGAGATGGGGGGTTGATCTTCAAAGGTCAGACGTCAAGTCAAATTCCAAAACTAAAAAACATGTCCCAGAAAATNTGGGCACCGAGTTAATTTGGATGGAGAAAATTAATAATAGTTCTCAGGGTCCACAGGCTAAAAGCATGATACAATATATGTCATTGTACTTCGTACTGAAATTGACGCATACAAAGTTTGTTGATCTGATGATAAATGTTGTCAAAGCAATAGTTCGAGATGTGCCTCAGACTCTTAGTGCAACAAGCTTGCCACTTGCTTGTATTTCTAATTCCTTGAATAAACCTAAGCCTCTCAAATTAGATGTGTCCTTGCCTTCTTTTCATGATATTAGATGGAGCTTATCACGGTTGTTGTACTTATTTAACATACAACTCGAGAGAAATGTTGCCACGTTCTTTGTGGTGCTCCTTATATTGTGCATCTCGTTTGTTTTCATTGGTGGTTTCCTGTTCTTCAAGTTCAGTAAACAAACTCTGGAAGATTGTCTTTGGGAAGCCTGGGCGTGTCTTATTTCATCATCTACTCATTTAAAACAAGCATCACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGCCTTCTAAGTACCATGACTGAACAATTTAGGAATAATATGCAAAGGCTCAGGGAGGGGGCCCAAATGCAAGTTCTGGAGACTGATCATATCATTATTTGTGGGATGAATAGCCATCTTCCTTTCATATTAAAGCAGCTAAATAAGTATCATGAATTTGCTGTCCGCTTAGGCACAGCTACAGCTAGGAGGCAGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGGATAGCTGACAATATTGCAAAAGATTTACATCATATTGATGTCCTTACCAAGAGTTGCAGCCTTAGTTTAACAAAATCATTTCAAAGAGCAGCAGCCAACAAAGCACGTGCAATAATTATACTGCCAACAAAAGGGGATCGGTATGAAGTTGATACAGATGCATTTCTTTCTGTTTTAGCTCTTCAACCAATTCCAGAGATGGATTCTGTCCCGACTATAGTCGAGGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCGGGATTGAAAGTAGCGCCAGTAGAAAATGTTGCATCCAAATTATTTGTTCAATGCTCTCGGCAGAAGGGGCTCATAAAGATCTACAGGCACTTGCTAAATTATCAAAAAAATGTATTCAATCTTTGTAACTTGCCTGATCTAGAAGGAATGACATATAGGCAAGTAAGACATAGATTTCAAGAGGCTGTTGTATGTGGGCTTTACCGGAGTGGGAGAATATACTTCCACCCAAATGATGATGAAATTCTGCAGCAAACCGACAAAGTATTGTTCATTGGATCCCTTCGGGATACTGAAAAGCCAGAAGTTGTAACCCCAAATGGGAAAGTAGGAAAGCTTGGAATTCATAGTGAGGAAATGCTTGAAAAGGATTTTGATTATGCCATCGAGATGAGTAAATTAAGACTTGCTAATATTGTGAAACGTCCTAACAGATCAGGTTCCAAGGCATCGGACGGGAATCTAGGACCAAAAGAGTGNATTCTCTTACTTGGTTGGCGACATGATGTTGTAGAAATGATTCAAGAGTATGATAATTATCTTGGTCCCGGAAGTGTTTTGGAAGTATTATCAGACACACCATTAAATGACAGGATTATGAGGGAAAGCAACATCACTGGTCGTAGCAAACTCAAGAATGTTCGAGTTTCTCATAGGATTGGAAATCCCATGGACTATGACACCTTAAAGGAAACCATTTTGAATATTCAGAATTCTTTAAAGAACGAAGATATTCCTTTGTCAATTGCCGTCATATCTGACAGAGAATGGCTTCTTGGAGATTCATCTAAGGCCGATAAGCTATCTGCTTATTCTCTCCTAGTTGCAGAAAATATCTGCAACAAACTTGGAGTCAAGGTACAAAATCTAGTTGCAGAAATTGTTGATTCAAAGCTGGGGAAACAAATTACTAGAATCAAGCCATCAGTGACCTATGTTGCAGCAGAGGAAATAATGAGCCTCGTAACAGCTCAAGTGGCTGAGAACAGTGAACTGAACGAAGTTTGGAAAGATGTACTAGATGCAGATGGTGATGAAATATATGTGAAGGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTTCCGAGAGAGCATATTTACGGAGAGAAGTGGCCATTGGTTATGTGAAGAACAACAAGAATGTGATCAACCCAGTTCCCAAGTCTGAGCCCCTCTCTCTTGAGTTGACTGACTCTTTGATAGTCATTTCTGAGCTGGAAGGTGAACAACCCATCATTTTGTAGTGATGCTGAGGCCTTGATATCATGCTAGGAAAAAAAAATTAGGAAAATTCGAAAATTTTGGTGATTGGGGTCGATTGATTGCTAATTAGGATGACTGAATATTCTTGTCCCACTCTTGCATCTTAAGGATTAAGGAATAAGTTGTGTCTGTGTTCTCTCGGGTGGCTTTTTATAGACGGGGGATTCAGAATAATAAGTTGTTACAATACGTTCCTCAAATGGAAAATATGGAAATTTAATTTAGCTTCTTGCACAACAAAAATGAAATGCAACTCAATAGATTCCATAGTTCAACAATGTTGTAAACGTTTACTTTTGCCACANGACATCGACTTAATCCATGATAAAGTTTTAAGTTGTGGTTTGTAACTGTGCGATTGTGACTACAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01582	48258	59127	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006813 potassium ion transport

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001582s00029513.1	PF06241.7	DUF1012	377	588	1.10E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.477
SRR1783600	control	8.428
SRR1783602	moderate drought stress	9.773
SRR1811619	moderate drought stress	9.730

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.312
DRR006520	Root Summer glycyrrhizin high producing strain	7.240
DRR006521	Root Winter glycyrrhizin high producing strain	9.340
DRR006522	Root Winter glycyrrhizin high producing strain	9.078
DRR006523	Root Summer glycyrrhizin low producing strain	15.000
DRR006524	Root Summer glycyrrhizin low producing strain	14.944
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.836
SRR2868004	Drought Stress (root)	14.766
SRR2967015	Control (root)	17.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.576
SRR9715740	Leaf	36.867
SRR9715741	Leaf	34.445
SRR9715739	Root	0.789
SRR9715742	Root	5.545
SRR9715743	Root	4.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.487
SRR8749028	MeJA induced 9h	19.648
SRR8749029	MeJA induced 9h	15.246
SRR8749030	Uninduced	9.416
SRR8749031	Uninduced	7.475
SRR8749032	Uninduced	6.310

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.250
SRR8400027	Control - Root	17.841