Gene detail

Gene detail information of Glyur001582s00029509

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04240.1	1.00E-67	AUX/IAA transcriptional regulator family protein
NR	KHN30562.1	9.96E-107	Auxin-induced protein 22B [Glycine soja]
Swissprot	tr\|P32294\|AX22B_VIGRR	1.00E-100	Auxin-induced protein 22B
trEMBL	tr\|V7BGA0\|V7BGA0_PHAVU	2.00E-106	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur001582s00029509.1
ATGCAATGCCCCTCGCTGCCAACCCATCACACTCACAATAACNTACACATACCCTCCTTCTATCTTCAATATCATATCTATAAAATAAGAAATCCTTCCACACTTGTATCTCATCTCATCTCAAGTCTTGAACATCTATCCATCTATCCATCTCACAAAGATTAGAAGAAGCTTAAGCACAATAAGAAAGAAAATAGAGGGCTTGCCTTGGATTGGATTGGCATATACATACAATTAATTCTGATCAATTTAGTGGGGAATTATGGAAAGCAGTGTGGCATATGAGAATGATCTCAACCTCAAGGCTACAGAGCTTAGATTGGGGCTTCCAGGGACAGATCAGGAAAATGAGGAAAAAGAAGCACTGCCTAAAGCCAACAACAAAAGGCCATTGACTGAAACTACTTCCAAGGAGTGTGGTTCAAAAAGCTCCAATATTGCTCCTCAACAAGTGGACAGTGATGCAGCCCCACCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTGCAGGAGGGTGAGGGTGGTGGGATCTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAAATTGACTTGAAGGTCTATGCAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGCGAGTACTCTGAAAAAGAAGGTTATAAGGGATCTGATTATGCACCTACATATGAAGACAAGGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCCANAGGTTTGGGTTGTGGTGTCTGAGAAACAAAACAACTAAACTAAATTACTATGCAAAGATCAGGAGAAAAAGTGTTTTGGTGTGAAGGGGTAACAAAAAAGGAACAACCTTTCAGCTTGGGTTCTCGGGAACTAATTAATGGGGTTTTGAATCACTCGTGTATGCTGATAGCATACCTATCTGAAGTTGTGCTCTAAGGCAGGGAAATGGAAGATACAGTGAAGTTTCTTTCCTCAAGTTTTGCAACATCTATGGTTGTTTTAGCATCCACGGTTGGATGCTATGATATATGCTGTTATGTCCACTGATTTTTTTTTTGTCAAGTTTCAAATGAGAAATCTCATCACAGAGATTTGCTTCAAATGAACTTCGTGTACAAGGGGGATNGATAGGGGTGATCATATGTATTGTTCATCCAAGTTTTTTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01582	24886	26506	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001582s00029509.1	PF02309.11	AUX_IAA	11	192	4.80E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.264
SRR1783600	control	15.526
SRR1783602	moderate drought stress	24.445
SRR1811619	moderate drought stress	23.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.370
DRR006520	Root Summer glycyrrhizin high producing strain	10.323
DRR006521	Root Winter glycyrrhizin high producing strain	3.116
DRR006522	Root Winter glycyrrhizin high producing strain	2.942
DRR006523	Root Summer glycyrrhizin low producing strain	4.045
DRR006524	Root Summer glycyrrhizin low producing strain	4.703
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.023
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.412

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.555
SRR2868004	Drought Stress (root)	86.817
SRR2967015	Control (root)	73.954

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.292
SRR9715740	Leaf	34.993
SRR9715741	Leaf	16.063
SRR9715739	Root	1.999
SRR9715742	Root	10.013
SRR9715743	Root	11.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	133.100
SRR8749028	MeJA induced 9h	44.721
SRR8749029	MeJA induced 9h	37.630
SRR8749030	Uninduced	2.679
SRR8749031	Uninduced	1.770
SRR8749032	Uninduced	1.984

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.870
SRR8400027	Control - Root	48.161