Gene detail

Gene detail information of Glyur001580s00039246

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11180.1	2.00E-138	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003552326.1	0	PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max]
COG	NP_252880.1	2.00E-29	iron/ascorbate oxidoreductase [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|P51091\|LDOX_MALDO	6.00E-68	Leucoanthocyanidin dioxygenase
trEMBL	tr\|I1MZ17\|I1MZ17_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G03020.1}

Sequence

Transcript Sequence

>Glyur001580s00039246.1
ATGTCCAACATTAACCAATCAGATTGGCCTGAACCAATAATCCGGGTTCAATCCTTATCCCAAAGCTGTGAAGATTCAATCCCTGACAGATATATCAAGCCCCCAACAGATAGACCATCCTCCATAACAAACACCTCTTCTTGTGGTGGTGATTCCAATATTAACATCCCAATTATTGACCTTGGAGGTTTAAATGGTACTGACCCAGATGTTCGAGCCTCAATTTTTGAGCAAATCTCAGAGGCTTGTCGTGAGTGGGGATTCTTCCAAATCGTGAACCATGGGGTTAGCCCTGAATTGATGGACAGGGCAAGGGAAACATGGCGTCAATTTTTTCACCTCCCCATGGAGGTGAAGCAGCGATACGCGAACTCGCCCAAGACTTATGAAGGGTATGGAAGTAGGCTTGGTGTTGAGAAAGGCGCTATTCTTGATTGGAGTGATTATTACTTTCTTCACTACCTTCCTTTGTCACTCAAGGACTACAACAAATGGCCTGCTCTGCCTCCCCTTTGCAGGTTGATGAAGGTTCTATCAATAAACCTTGGATTGGGGGAGGGAATTCTTCAAGATGGTTTTGGGGGTGAAGACATAGGGGCATGCATGAGAGTGAATTTTTACCCAAAGTGTCCAAGGCCAGAGCTGACACTAGGTTTGTCATCGCACTCAGACCCAGGAGGCATGACTCTATTGCTTCCAGATGATCAAATACCTGGTCTTCAGGTTCGCAAATGTGACAATTGGATCACCGTCAACCCTGCTCGACATGCCTTCATCGTTAATATTGGGGACCAAATTCAGCAGGTTCTCAGCAATGCAATCTACAAGAGTGTGGAGCACAGAGTGATAGTAAATTCAGATATAGAGAGAGTTTCGTTGGCCTTCTTCTACAACCCCAAAAGTGATATACCCATAGAGCCACTAAAAGAGCTGGTAACACTGGACAAGCCTGCACTATACCCAGCAATGACCTTCGATGAATACAGGCTCTTCATCAGAATGAGAGGACCTCGTGGGAAATCTCAAGTAGAATCTATGAAGTCTCCTAGATGATCATGCTCAAGGGCATTCGTTGCCTATGGTCTAACTTATATTTAAGCCTAAAGCAAATATTAAGATGATAAGCCTTTTTAAACAAATTTATTAGAATACCAACACATGTTGGTCCAAGTAACAATTGGAGCTTGGTTTTCCTTAAATAAN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01580	39541	43871	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001580s00039246.1	PF14226.1	DIOX_N	56	167	1.10E-33
Glyur001580s00039246.1	PF03171.15	2OG-FeII_Oxy	201	299	1.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.690
SRR1783600	control	0.688
SRR1783602	moderate drought stress	0.252
SRR1811619	moderate drought stress	0.245

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.450
DRR006520	Root Summer glycyrrhizin high producing strain	0.446
DRR006521	Root Winter glycyrrhizin high producing strain	1.205
DRR006522	Root Winter glycyrrhizin high producing strain	1.108
DRR006523	Root Summer glycyrrhizin low producing strain	1.750
DRR006524	Root Summer glycyrrhizin low producing strain	2.070
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.198
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.212

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.010
SRR2868004	Drought Stress (root)	18.298
SRR2967015	Control (root)	14.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.079
SRR9715740	Leaf	39.230
SRR9715741	Leaf	50.662
SRR9715739	Root	0.344
SRR9715742	Root	2.206
SRR9715743	Root	1.676

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.485
SRR8749028	MeJA induced 9h	7.464
SRR8749029	MeJA induced 9h	1.128
SRR8749030	Uninduced	2.419
SRR8749031	Uninduced	1.775
SRR8749032	Uninduced	3.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.065
SRR8400027	Control - Root	3.135