Gene detail

Gene detail information of Glyur001577s00033502

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09360.1	2.00E-109	Cyclin/Brf1-like TBP-binding protein
NR	XP_006598955.1	0	PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform X1 [Glycine max]
COG	NP_111602.1	1.00E-15	transcription initiation factor IIB [Thermoplasma volcanium GSS1]
trEMBL	tr\|K7MF19\|K7MF19_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G03973.3}

Sequence

Transcript Sequence

>Glyur001577s00033502.1
ATGAACCCTAACTATCAATTCAAATACGATTCCTACTTCTCCAAGATTCCCTCTATAATTTCAACTCAACTCCCTCGGATTTTCGACTTCCAATTTTCAATTCTGCACTTGTTTTTCGAAATTCTCCATCTCCCTGACTCTGTAGATTTGTTTTCAAGCTCAATGGTGTACTGCGGCCACTGTGCCAAAAACGTTGCCGGCGAGCGACTCGATGACGGTTACTTATGTTGTGGTTACTGTGGGAAGGTGTTGGAAGATCATTATTTTTCTCAGGAGCCCACGTTTGTTAAAAACTCGGCAGGGCAGAGCAAATTATCGGGTAGTTATGTAAGAACGGTTCAAAGCGAGCTCTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATCAAATATTTAAGTTTCAGCCTTGGTGTGAATGATGAAAATATGGCCAACCAAGCTTTGGCCTTCTATAAAATCGCAATTGAGCGAAATTTCACCCGCGGACGTAAATCAGAGCAAGTACAGGCTGCATGTCNCTATATTGCATTCCGGCACAACAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTTGGAGCAGTTTTCTTGCAGCTTTGTAAAGCGCTAAGGCTTGAAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTTACAAATTTGCTAATAGTAGGTATCCTTTTATTGATTTACATGTAGATTTGTTAAAGCAAAGGAATGTGGTTGTCTCTGAAACTGCGTTGAGCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGTGGTGCAGCATTATACATATCTGCTCTTGCACATGGTTTCAAGTGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAGGCAACATTGACCAAGCGATTGGTAGAATTTGAGAATACAGACTCTTCTAGCTTGACAATTGAGGAATTGAATATGATGGCAAAAGAGCATGAAAATAGTCCAACTTTTGATAAGCTGTCAGGAGGACTGGGTAGTGGTTTGGACCCCCCTGCATTCCAGTGTGCTGAGAGGGAGAGAATGAAGAAAACACTTTCAGAGGGAAGTGCCAATGAATCGCATGGTTTGGTGAAGGCATCAAATGGTGCATGCAAAGGCCATAAAGAAGACTTGCCTGCCTCTGTTCCACAAAGGGAAAATGTTGAGCGTGAGACCACTAAAGATGGTGAGCATGATGAATCACATAGAGAAGATGACACCAGTGCAAAAACTCATGATGAATCAGAAAGTTTCTCTGACATCGATGATCAAGAGGTTGATGGGTACCTTTTTAATGAGGAGGAGAAGCATTACAAGAAGATAATATGGGAAGAAGTGAACCGAGAGTTTCTTAAGGAGCAAGCAGCCAAGGAAGCAGCTGCAGCAGGTGCTATAAAAGCTTTTGAAGCAAATTTCGAAAACTGTTCGGAGGATCTACGAGCAGCAAGAGAGCTTGCTGCATCTGCTGCTGCAAGTGTGGCAAAATCCAGGAAGGAAATGAATCAGAGACGAGCCCATGNGGCAAAAAATTCAGGGCCTGCTCAATCTGCTGCAGAGGCCACTTCCAAAATGTTGGTAAAAAAGAGGCTCTGCTCCAAATTCAATTTTGATAATCTGGCAGAATTATTTCATGAACCCGAAGATGGGAATAATCCCAAAAAAGTACGATTTGATCTACCCTTTGATAATCATGACAAATTTCAGTCCAAGATTGAGAGCAAAAAGGATGATAAGCTGGGATCAGCGGATGATTTTGAGGATGGTGACATGGGGGATATATATGAAAATACTTGGTATGCTGAGAATATGGATCAGCCATATTTCCCTGAGGATGATGGTTATAATTATGATGATCATTACTGATNTAAGTTGGTAGGTATTACTATAGGGTTCAGCTTGGTAGGTATATATATTTAGTGTAGGTACTCCATTTAACAAGAAATTTAGACATAGCGTGTCAATTAAAATTTATATATATCAAAAAGAAAAGAAAAGAAAAGAGAAATGCATATATTCTTGTCAACAGGTAAAGTGTATGTTCTCTCTAATTTCCCCAAATGTGCAAACGCAATGCACTCACTTAAGATCCAAGGAGCACAACCTTTTTTTTTTGATACACAAGGAGCACAACCTTTAGTTACAGATTGCCAACGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01577	32452	42403	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

GO:0006384 transcription initiation from RNA polymerase III promoter

cellular_component
GO:0000126 transcription factor TFIIIB complex

molecular_function

GO:0008270 zinc ion binding

GO:0017025 TBP-class protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001577s00033502.1	PF00382.14	TFIIB	145	197	3.10E-07
Glyur001577s00033502.1	PF00382.14	TFIIB	256	314	6.60E-09
Glyur001577s00033502.1	PF07741.8	BRF1	446	566	7.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.875
SRR1783600	control	1.737
SRR1783602	moderate drought stress	3.726
SRR1811619	moderate drought stress	3.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.948
DRR006520	Root Summer glycyrrhizin high producing strain	3.837
DRR006521	Root Winter glycyrrhizin high producing strain	5.600
DRR006522	Root Winter glycyrrhizin high producing strain	5.323
DRR006523	Root Summer glycyrrhizin low producing strain	4.882
DRR006524	Root Summer glycyrrhizin low producing strain	5.190
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.672

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.311
SRR2868004	Drought Stress (root)	9.354
SRR2967015	Control (root)	10.632

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.239
SRR9715740	Leaf	8.110
SRR9715741	Leaf	9.305
SRR9715739	Root	0.659
SRR9715742	Root	2.548
SRR9715743	Root	2.037

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.954
SRR8749028	MeJA induced 9h	2.696
SRR8749029	MeJA induced 9h	1.397
SRR8749030	Uninduced	2.629
SRR8749031	Uninduced	1.212
SRR8749032	Uninduced	0.933

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.476
SRR8400027	Control - Root	8.573