Gene detail

Gene detail information of Glyur001577s00033497

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04440.1	4.00E-124	Plasma-membrane choline transporter family protein
NR	XP_003548455.1	0	PREDICTED: uncharacterized protein LOC100818674 [Glycine max]
trEMBL	tr\|K7MF21\|K7MF21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G04000.2}

Sequence

Transcript Sequence

>Glyur001577s00033497.1
ATGGCCATGTTGAATAACTTCAACATCAGCACACAACCACAGATCCTCCAGGTAAGTTCAATAGCAAAAGATTTTCATTTTACACACCCCATTAAGGAACTCTTTTGTTCAACTTGGTCATTTCTAGTGCAGGCACAAGCACAAGATTCAAGCTTTCCAAACAGAACAACAGTGGCGGGGCAAACAGTGAGAAGGGTATTCCAGATTCTCTTCTACCTGCATCTGGTCCTGGTTGCAGTCTTGGTGATTTTCCTCACCATCTATGGTCTTGTCTCAAACTCTCACACCCACCATTTCCACCCTGAAAAGTGGTACCCTCCACTTCTAGCATCAACAGCATGTGCAGGAATTGTTGGTTTCACATGGCAATGGATCATTGCCTGCCACCCCACAAAGGCACTCAAGGCAGCATTTTGGCTGAGTCCGTTGCTAACATGTGCAATGGGGATTCTGTTTGTGCTCATTGGATCTCCAGTAAGTCTGGCAGCTGGTGTGGTTTCTTTAGTTTCTGCAATAATCCAATCCATCTATGGTTGTTGGGTCAGTCCCAGGTTCGAATATGCCACCGGAATCTTGTCGGTTTCAATAGCTTTTCCTCCTGCTAAAACCAAGGGGTTAGCGCTTTCATCGACCCTCATCGGTATCCTTTACTGCTGTTTCCTGGTGGCTGGGATTGGAGGAGCTAGAGCCGTTGAAAACAGGACCAATCTAGCACCCCTTTTCATCTTGATGATCCTGCTGAGCCTGGGATGGACCATGCAGTTTCTGAAGAATGCAGTGCAAGTCACCATTTCAAGGGTCAAGTACATGCATTTTGCTGGAGGAGTTGACACCAGAGTGGCATTCTGTGATACAATCAAGTACCTAACTGGGAGTGTTTCCATAGGCTCCATCCTTGTCCCCATCATTGGAATCTTCCGGGGTTTTGCGCGATGGACGAGTCTGGTTGGAGGAGATACAGATGANTTCATGTTCTCCTGTGTTAGCTGCTATGTGGGGATTGCATCACTTCTTGTGACCAAGGGGAACCGGTGGGGCTTTGTGCATGTTGGAGTTTATAACAAGGGGTTTGTGCAGGCATCTTCTGATACTTGGGAGATGTTCATTAGAGTTGGACTACAGCAACTGATAGACTTGGATCTCACTGGGGCCTTCTGTTTCCTTAGTGGGGTTGCAGTGGGTGCAATCTGTAGTCTTGTGAGTGGAATTTGGAGTCTTACAGTGCACAGGAGCTATGCCATTGAAGTATCCATTTATGCTTTCCTCATTGGCTATTTCATGTGTCGCTTGGTGATTGCATGGCCACAAGCATGTGTTTCAGCTTACTATGTTGCCTACGCAGAGAACCCACAGAGCACTCAATTTGACTCAACTATTCCAGTACGCTTGATGCAGCTTCACAGATCTCAAGCATTGCGAAGATTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01577	10171	12055	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001577s00033497.1	PF04515.7	Choline_transpo	139	456	3.00E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.194
SRR1783600	control	0.282
SRR1783602	moderate drought stress	0.705
SRR1811619	moderate drought stress	0.657

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.228
DRR006520	Root Summer glycyrrhizin high producing strain	0.086
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.758
SRR2868004	Drought Stress (root)	8.114
SRR2967015	Control (root)	9.667

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.469
SRR9715740	Leaf	0.158
SRR9715741	Leaf	0.575
SRR9715739	Root	0.884
SRR9715742	Root	0.694
SRR9715743	Root	1.173

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.349
SRR8749028	MeJA induced 9h	3.181
SRR8749029	MeJA induced 9h	2.419
SRR8749030	Uninduced	0.602
SRR8749031	Uninduced	1.316
SRR8749032	Uninduced	0.715

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.168
SRR8400027	Control - Root	2.476