Gene detail

Gene detail information of Glyur001575s00033024.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01920.1	2.00E-172	Protein kinase superfamily protein
NR	KHN24559.1	0	Serine/threonine-protein kinase STN8, chloroplastic [Glycine soja]
COG	NP_864467.1	5.00E-10	serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9LZV4\|STN8_ARATH	0	Serine/threonine-protein kinase STN8, chloroplastic (Precursor)
trEMBL	tr\|I1MQP1\|I1MQP1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G34620.1}

Sequence

Transcript Sequence

>Glyur001575s00033024.1
CCTTAATTTTGGACCAAGAAAACAAAGAGGCCGGTGGATAAAGTGAGGAGGTGGCAAAAGTGGTACCTCTGCTGCTTGCTGCTTGCTGTTTGATGTTGGGAGGAGCGGTGTTTGGAGTNTTGGAATGAATGTGATCATGGCTTCTTTGCTAAATCCAACTGCAACCACCACTACAACACTTAAGCGCAATCAAATCTCAATCTGCTTCTCTCCCTTAAAAGCAAAATCCGCCATCCCAAATCACGTAGTTTCCTTCTCAGCAAGAACAAACCGTTTCAAGTGCAATGCATTCTTGGAAGGTCTGTTGGAGAAGAGTAGTGAAATTAGCCTCCAATCAGGAATGTTGCTGCAGCAGCAGTTTGAGAGAGTGAGTGAAGAGTTATCAGACATGCAGAGGTTGGGGTTTGTGGTGTTTGGTGGCCTGACATGGGTTTACCTGACTGCAAGGCCAGGTGTGCTCATTGGTGCCATTGATGCCTACCTTCTTGCTCCCCTTCAACTGGGTCTTGACAATCTATTTGGAAGGAGAAAAAACCTCAAGAGGAGTGATTTCCTTGTTGGGGATAAGCTTGGTGAAGGGTCCTTTGGTGTTGTATATTCGGGTGTTTTGGTCCCAAAGAATGTGAATGTGGATGACAGAAAGGGAAGAAGAGGCAAGGCACTAACAAAGTTGGATGCCAAATCTAAGGATAAAGTCATCCTTAAAAAGGTCAAGGTTGGAGTCCAACAGGCTGAAGAATTTGGTGAATTTGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAGACGAAATGCATTGATCATCAAGCAAATCATGCGCCAGATAATTACCTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACNGGGGAAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATCGGAAAGAATTATGTTCCCAACAGAACACTTTTGGATCCCGACTATTGCCCCCCGGAACTATATGTGCTCCCAGAAGAAACACCAAGTCCTCCACCAGAGCCAATTGCTGCTTTCCTTTCACCAATCCTATGGCAGTTAAACAGCCCTGATCTGTTCGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAACTTTAAGGTCTCCTTCTGCTTTGAAGAATTTCAATTTGGAAATAAGAACCTGTGGATATGATTTGAAAAAATGGAGGGACTATACTCGCCTCAGGCCTGACTTCCAAATTCTTGATAGTGAATCTGGTAGGGGGTGGGACTTAGCAACAAAGCTTATCTCTGAGAGAGGTTCCTTAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTTAACCAGAAAGTGAGCTGCATAGCAATGGGGAGCACATTTGAATTCAGAGGTGTCCCACGGCAAGCCCACTTAACTTACGAATTGACAACCATCACATAAGATTTTGTTACATTCCATTTTTTCTCTCTTTGCATTTTCCTCCCCGAGTTTAAATCCGGGGCAGATTTTGTACACAATTTCAGGCACATAGTAAGCCTCAGGAAATTTATATCTTAAAGAAGGTTGCTGCCATATAGATTTATATCTTTCATGTAACCGATGTGACAACAAATTCAAGCAAGAGCACTTGGTGGTTGTAGAGCTTTATCAGCCTTCTCTCTACAAGAGGTGAAAGCTCGAGGATTGGCAGGACCTACCTGAAATCCATTACTTCGAGTTCCTATGGCTTGAAACAAGTTATATAACTCAGTGGAACTGGAATGTCAATGAGATATCTGGTTGGTGTCGTACTTGTTTGATGAAACTTACTTCCAAGACTGAGATTATGTATTCAATTCCATATGGCACTGTCATTTGAGTAGTGTTCTTGTACGAAATGGTGCTTATGGCTTTCAAATTTGAGTAGTGTTCTTGTACGAAATGGTGCTTATGGCTTTCAAACTAGTTGTTATCAATAAAATAATACTTCACACCTAAAAATTAAAATGCTAGCTTATTNTTTTACAAATTGCCACGTGAATGGCAGAGCATACAAAATAAAGACACTATTATTAGCATCAATACAAACATAATGTTATGGTGAGTCCCCATATTTATCTCCACTCTTCACTTTCTTTGTTGTATCATTCTCAAACTGAAGTTGACATTCTTCCATCCCCTGTGACAGACAAGCATGTTTATATGGCAGGCTATGATTGGCAACTTTCCACATAAGGTGTTAGAGTTCATCGTGAATGTGATTGAGTACTTTTTTGAACACTTTCTTCTTCTTACAAATCCAATGGCACTTCTTAGAACACAGGGAGTTGAATAGGGCAAGCCTTGTGGACTGAAGGGATATAATGCTTGAAGTGGAAGGAGATTTTGAGAGAACAATGCCATACCCATCATCCATGTAATCTGTTCCATCAGGAAAGAGCTGCCACAAAAGGCTTCCAGCCCCACTACCTCCTTGCTTTGTAGAGTTTAGGATGGTCTTGTACACAGTATTTATAAGGGTATCTCTATATGATGAATTGTAGCCAGGATCTTTTGAAGATACACCAAACTCACCAAAAACAACTGGCATTCCAAGATACTTCTCAGCATCCTCTATGTGGGCTTCCATCCAAGACTTTATAAAGGGGAGATGGGAACCAGCAATTGATTGTGAAATCCTTCAACCAAGTAATTAATTCCTGGTTAGAAGCTGTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01575	34012	38549	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001575s00033024.1	PF00069.20	Pkinase	146	485	1.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.080
SRR1783600	control	3.139
SRR1783602	moderate drought stress	2.351
SRR1811619	moderate drought stress	2.307

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.925
DRR006520	Root Summer glycyrrhizin high producing strain	4.734
DRR006521	Root Winter glycyrrhizin high producing strain	1.130
DRR006522	Root Winter glycyrrhizin high producing strain	1.130
DRR006523	Root Summer glycyrrhizin low producing strain	7.119
DRR006524	Root Summer glycyrrhizin low producing strain	7.330
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.934
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.890

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.209
SRR2868004	Drought Stress (root)	10.820
SRR2967015	Control (root)	10.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.939
SRR9715740	Leaf	31.536
SRR9715741	Leaf	18.037
SRR9715739	Root	0.993
SRR9715742	Root	6.232
SRR9715743	Root	5.820

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.540
SRR8749028	MeJA induced 9h	3.679
SRR8749029	MeJA induced 9h	2.206
SRR8749030	Uninduced	1.350
SRR8749031	Uninduced	0.795
SRR8749032	Uninduced	1.666

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.894
SRR8400027	Control - Root	7.577