Gene detail

Gene detail information of Glyur001574s00034448

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24240.1	4.00E-57	WRKY DNA-binding protein 7
NR	KHN22491.1	6.73E-114	Putative WRKY transcription factor 7 [Glycine soja]
Swissprot	tr\|Q9STX0\|WRKY7_ARATH	7.00E-81	Probable WRKY transcription factor 7
trEMBL	tr\|E7CEX6\|E7CEX6_CUCSA	2.00E-97	WRKY protein {ECO:0000313\|EMBL:ADU52519.1}

Sequence

Transcript Sequence

>Glyur001574s00034448.1
ATGGCNGTGGAGCTTATAACAGGTTATGGGGGCGAAAATGATCATAATAGATTTGCAACAACAACGAGTACCAGTGATGATGACAATGCAATTGCAGTGCAAGAAGCAGCTTCTGCTGGAATTCACAGCGTGGAGAAACTCATGAACATGATTTCTCAGCAGAATCATCATCATCATCAACAACAACAAGAAGAGGCTAATAACAACGTTAATGATGGTTGCGAATTAATTGGANCGGTTGCTGATGTGGCGGTGAACCGGTTCAGAGAGGTTATTGCTCTGCTTGACAGGCCAAGAACCGGTCACGCTCGTTTCAGAAGGGCCCCACCAACACTACCACAACCGGTTCCTCTTCTTCAATTGCAACAAACGGTGGAATCAAATTCAAATTCATCAAAACCCATAGTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGTTGTGCAGCCACAACAACTGAAAACAAAAACAGAACAAGTCTCTGGCTCTGCTTTCAAGGTTTATTGTCCTCCTCCTCCTCCTCCGAAGAATAACAATGAATTGGCAGCACATGGTTCTATCAAGTTTTCGGTTTCTGCTGCAAACTCATCATTTGTGTCCACCTTAACCGGGGACAGTGAAAATTTGCAACAACGACCCTGTCGTTCTTCTTCTGGGTTCCAAATAAGCCACGTGTCACTTCAGGGGTCTTCTTATATGCGTAATAAACCGCCTCTGTCTTCAAATTCTANGAAGAGAAAGTGCAATTCCGTGGATTTTCCTGGTATCAAGTGTGGTTCATCATCCTCTGCGGCACAGTGCCATTGCTCCAAGAAAAGGCATGCTTTTATCCTAAGCTGTCATAACAATTTTTTTTTTTATTGTTGGAAATTGAAGTTGAAGAGAGTGATTAGAGTGCCGGCAATTAGTGCCAAGACTGCTGATATCCCAGCTGATGAATATTCGTGGAGAAAATATGGACAGAAACCCATCAAGGGCTCTCCCCACCCGAGGGGGTATTACAAGTGCACCAGCGTGAGAGGCTGCCCGGCACGCAAACACGTGGAGCGCGCCGTGGACGATCCCAACATGCTTGTTGTCACCTACGAAGGAGATCATATTCATAATCACTCCCACACCACCGCTAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01574	52856	54702	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001574s00034448.1	PF10533.4	Plant_zn_clust	290	308	3.60E-06
Glyur001574s00034448.1	PF03106.10	WRKY	311	369	1.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.652
SRR1783600	control	2.775
SRR1783602	moderate drought stress	4.296
SRR1811619	moderate drought stress	4.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.917
DRR006520	Root Summer glycyrrhizin high producing strain	3.113
DRR006521	Root Winter glycyrrhizin high producing strain	0.098
DRR006522	Root Winter glycyrrhizin high producing strain	0.162
DRR006523	Root Summer glycyrrhizin low producing strain	7.451
DRR006524	Root Summer glycyrrhizin low producing strain	7.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.421
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.163
SRR2868004	Drought Stress (root)	10.774
SRR2967015	Control (root)	12.148

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.836
SRR9715740	Leaf	1.446
SRR9715741	Leaf	2.051
SRR9715739	Root	4.907
SRR9715742	Root	9.926
SRR9715743	Root	7.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.917
SRR8749028	MeJA induced 9h	180.901
SRR8749029	MeJA induced 9h	151.470
SRR8749030	Uninduced	28.165
SRR8749031	Uninduced	88.253
SRR8749032	Uninduced	61.864

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.566
SRR8400027	Control - Root	13.048