Gene detail

Gene detail information of Glyur001574s00034443

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60060.1	3.00E-55	Serine/threonine-protein kinase WNK (With No Lysine)-related
NR	XP_004499022.1	5.42E-177	PREDICTED: uncharacterized protein LOC101493639 isoform X1 [Cicer arietinum]
Swissprot	tr\|P0C7P8\|LHWL1_ARATH	4.00E-17	Transcription factor EMB1444
trEMBL	tr\|Q2HTQ7\|Q2HTQ7_MEDTR	7.00E-175	Transcription factor-like protein {ECO:0000313\|EMBL:AES59381.1}

Sequence

Transcript Sequence

>Glyur001574s00034443.1
ATGCCCCTCACCACCACCAGTCACCAATGGGAAAGGGAAAGTCCAAGTCCAGGTCCCACTCTAAAGATTACAACCACAAACAACACAACTCATAGTGCCTGCAAGCTACGACATACTCTCAGAAGCATATGTTCATTTCCTAATTCTTCAACTTCTTCCAAGTGGGTGTATGCAGTTTTCTGGAGGATAGTACCTCGAAATTTTCCTCCACCAAGGTGGGAATTTGGAGGGAGTGCTCTTGATCTCTCCAAGGGAAACAAAAGAAACTGGATCCTTGTCTGGGAAGATGGGTTCTGTGATTTNAATGAATGTGAGCAAAGGAGGAGTGAATACTTGAATGACAAGTTTGGAGCTGACGTGTTCTTCAAGATGTCTCATGAGGTTTACAGTTATGGAGAGGGATTATTGGGGAAAGTGGCTGCAGATAATAGTCACAGATGGGTTTACAGTGACNCTCAAAATGGGTGTGAACCTAACTACATTGGTTCATGGAATGCTTCAATTGACCATCAACCAAGGGCCTGGGAGTTTCAGTTAAATTCAGGTATTCAGACAATTGCTGTCATTGCTGTAAGANAAGGCTTAGTACAACTGGGTTCATTTAGCAAGATTGCTGAGGATCTAGATTTAGTGCTTAGCATTCAAAGGAAATTCAGCTGCCTCCAGACAATACCAGGCATGTTTGCAATTCAAAGACCACAACACCTACCAATCCAACTCCAACAACATCCATNCATTACCAAACCCAATTTCATGATGATGGAAAACGACCATGAAATGGCTCAACATGCCTACAATAAGAACCAAGTAACACAAGTCAATGCACTGCATCATGATGAAAGATCAAACTATTTTTCTATGATAGCCATCAACTTGGGTAGAAATCTTCCACAGAATAATGGAACAGCAACACCACCTCTTTGGTCACCTCCTCCTTCCTTGCCCAACATGATGTCTTGCAATCTTGGAGCTTTTCTATCTGTCAATAATCCAACTCAAGTTCATGAAACCAATAGGATCAACAACAACACAGGCCAGAAATTCAAGGTTGAGGAGAACNCATTTCATATTGGTGGTGATGGAGATCAGAAAGGAAAGGCAGGGTGGTCCTAAAATGAACATATTTACCNAGGTTTTAAATTGTGGTTGCGGTTGCGTTTATGTCGCGATCCTTGGTATTGTGGACAAATGCGGCTGATACAGCTACAATTGCAGTNGTGATTCGGTTTCGGAGACTTTCTAAACCATTATGTCGCGGCCNCAATTGCGGTTTCGGGACCTTTTATTTAAAACCTTGATAATCACCACCCTTAATTTTAGTAATTTGCTTGTAATTATGTATTTATGATAGAGAGATGAGTTATCTTTTCTACCGGCTCCTCTAGGCCACCANAAAGGGATAGGTGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01574	16034	18521	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001574s00034443.1	PF14215.1	bHLH-MYC_N	36	218	1.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.584
SRR1783600	control	2.809
SRR1783602	moderate drought stress	13.048
SRR1811619	moderate drought stress	13.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.307
DRR006520	Root Summer glycyrrhizin high producing strain	0.297
DRR006521	Root Winter glycyrrhizin high producing strain	0.078
DRR006522	Root Winter glycyrrhizin high producing strain	0.077
DRR006523	Root Summer glycyrrhizin low producing strain	0.155
DRR006524	Root Summer glycyrrhizin low producing strain	0.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.777

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.200
SRR2868004	Drought Stress (root)	2.738
SRR2967015	Control (root)	4.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.296
SRR9715740	Leaf	51.941
SRR9715741	Leaf	45.217
SRR9715739	Root	2.925
SRR9715742	Root	1.261
SRR9715743	Root	1.671

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.035
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.040
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.109
SRR8749032	Uninduced	0.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.636
SRR8400027	Control - Root	8.344