Gene detail

Gene detail information of Glyur001572s00035827.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G38110.1	glycerol-3-phosphate acyltransferase 6
NR	XP_010109641.1	hypothetical protein L484_015596 [Morus notabilis]
Swissprot	tr\|O80437\|GPAT6_ARATH	Glycerol-3-phosphate 2-O-acyltransferase 6
trEMBL	tr\|W9S2X1\|W9S2X1_9ROSA	Uncharacterized protein {ECO:0000313\|EMBL:EXC23686.1}

Sequence

Transcript Sequence

>Glyur001572s00035827.1
CTCAATAATCGTTGAACAACAACATCACCGTGTCTTCACCCCCTCTCCTTTTATAAACACCCCCTTCCTCTCTCATTTTCTCCTCATAACAACAACAACANCATTTCCAAAGGGGTGGCTATCACAACTCTTCCAATTATGGGAGCCTTTCGCCATTTCGAACCAATCTCAAAATGCAAAACAGAACATAGATCAAAACAGACAGTAGCATCAGACTTAGATGGCACACTTCTCGTGTCTCGAAGTGCTTTCCCTTACTACATGCTCATTGCTCTTGAAGCAGGTAGCATCNTAAGAGGACTCGTTCTCTTAGCCTCTGTCCCTTTTGTCTACTTCACGTACNTCTTCATCTCAGAACCATTGGCCATAAAAGCCTTCATCTTCATCACCTTCGCGGGGTTGAAGATAAAGGATGTTGAGATGGTGTCAAGGTCTGTGTTACCNAAGTTCTATGCAGAGGATGTTCACCCTGAATCATGGAGGGTGTTCAGTTCCTTTGGGAAGCGTTACATTGTGACCGCTAGTCCGAGGATTATGGTGGAACCGTTTGTTAAGACCTTTTTGGGTGCTGATAAGGTTCTTGGGACAGAGCTTGAGGCAACAAAAGCAGGGAGGGCAACTGGGTTTGTTAAGGATCATGTGCTTGTTGGGGAGCACAAGAAAGATGCTGTTGTTAAGGAGTTTCAGTCTAAGTTGCCTGACTTGGGACTTGGAGATAGTGAAACTGATCATGACTTCATGTCAATTTGCAAGAGGCCAACTCCTCTTGCTGCCCTCTTGANCTTCCTATGGCTACCAATTGGGATCATACTCTCAATCATGAGGGTCTACCTGAACATCCCTTTGCCAGAAAGAATAGCTTGGTACAACTATAAGCTTTTGGGAATCAGAGTCACTGTGAAGGGTACCCCTCCACCACCCCCAAAGAAAGGCCAAAAGGGAGTCCTATTTGTTTGCAACCACCGCACAGTTTTAGACCCAATTGTGACAGCAGTTGCACTAGGCAGAAAAATCAGCTGTGTCACATATAGTATCAGCAAATTCAGTGAAATCATTTCACCAATCAAAGCAGTGGCACTATCAAGGGAAAGGGAGAAAGATGCAGCAAACATAAGGGCATTGCTTGAAGAAGGTGACTTGGTGATTTGTCCTGAAGGCACAACTTGTAGAGAGCCATTCCTTCTGAGGTTCAGTGCACTCTTTGCTGAGCTAACTGATAGGATTGTCCCAGTTGCTATCAACACAAAGCAAAGTGTGTTCTACGGTACATCGGTTCGTGGACACAAGTTCTTAGACCCTTACTTTGTGTTCATGAATCCCATGCCTACTTATGAGATCACTTTCTTGAGCCAGCTTCCCAAAGAGCTCACATGCAGTGGAGGGAAATCTGCAATTGAAGTTGCAAATTACATTCAAAGGGTNCTTGCAGGGACACTTGGATTTGAGTGCACCAATTTGACAAGGAAGGATAAGTATGCTATGCTTGCTGGAACAGATGGGACAGTTCCATCTAAGAAGGAGAAAGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01572	50331	53707	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13508	GPAT	EC:2.3.1.15	Glycerolipid metabolism	map00561
			Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001572s00035827.1	PF12710.2	HAD	24	201	1.00E-10
Glyur001572s00035827.1	PF01553.16	Acyltransferase	251	366	3.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.651
SRR1783600	control	22.708
SRR1783602	moderate drought stress	17.158
SRR1811619	moderate drought stress	16.729

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.062
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.043
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	122.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	120.569

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.872
SRR2868004	Drought Stress (root)	38.281
SRR2967015	Control (root)	35.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.774
SRR9715740	Leaf	32.212
SRR9715741	Leaf	65.781
SRR9715739	Root	29.271
SRR9715742	Root	11.907
SRR9715743	Root	15.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.109
SRR8749029	MeJA induced 9h	0.089
SRR8749030	Uninduced	0.041
SRR8749031	Uninduced	0.084
SRR8749032	Uninduced	0.103

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	80.409
SRR8400027	Control - Root	70.684