Gene detail

Gene detail information of Glyur001572s00035823

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01220.1	0	sulfoquinovosyldiacylglycerol 2
NR	AES79437.2	0	group 1 family glycosyltransferase [Medicago truncatula]
COG	YP_007124156.1	4.00E-98	glycosyltransferase [Microcoleus sp. PCC 7113]
trEMBL	tr\|G7L6J3\|G7L6J3_MEDTR	0	Group 1 family glycosyltransferase {ECO:0000313\|EMBL:AES79437.2}

Sequence

Transcript Sequence

>Glyur001572s00035823.1
AGAATCAATTATACATATGAANTTAATGCTCCAGCCACGCAGAGGCACATATATTTTCTGATTTACAGAGTCAACACTCAACACTTGAAAAACAATTTCTGGCTGCACATGGAATCAGGAATATGCTTATCTTCAACCCTTTAAGCGCCACTTCCATGTGGAATAACCAGCTAAGGAGACAAGACACGAGGGTTAATCGCATGGGCAATGAATGATTTCTTCATCTGTTCATCAATAAAACGTGTATGGGAAAAGAATTTGCCCCATAACGAAGAAGTGTTTTGTAATAGCAATATACTCACTCACACAGACACATATATTCCATTCTTAGGGAGTTAGAGTCCTTTCCAACTTAGTTGGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATAGCACACCCAACGTATGATATTGATTCTATGATTCTATCCAAATTGTAAAGCTGGTTCCTTTTACATCGTACACACAAATACAACGTCATGAAGACTACTGCTCTCTCTATAAATCCCACTCTCCCTCCTCTCTTTCCTTCAACTGCCACNACACCTTCTTCTTATTCATCATGTTATTCATACACTCCTAACCCTGTTAGATTCCAACGTTTCCAATCGTTAGGAGCAAAACCCATTACTCTATCCTGCAGGGGAGCACGATTGTGCTCTTTTCAGGGGTCAAAAACTTTGAAGGGTAGGAAAAGTTTGGTGCTTGAAGCTAAAAACATGGCCACGACAGAGGTTGACTCTCATGAAGAGAAAGAGAAGGAAGAGGGTCCTGCTTCTTCTGCTTTGCTTGGCTCTGAGAATGAAAGGAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAGCCTTCTCCCTTTGCTTATGTCTCAGGATACAAAAATCGGTTTCAGAATTTTATTAGATGCCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACGCATAAAGGAGTGCCCCAGGAATTCTATGGAGCCAAATTAATCGGATCTTGGAGCTTTCCCCTCCCTTGGTATCAGAAAGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGGTCTTTGGTGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCACGTACCAGTGTACATTCCAAGATATACCTTTAGTTGGCTGGTGAAACCCATGTGGTTGGTCATAAAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCAGTTGCCATTGGGAGGGATCTCCAAGAAGCCAGAGTAACTGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCTCGATACCGCTCGCATGAGATGCGATTAAGACTAAGCAATGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGATTTTCTCAAAAGTATCATGGATAGGCTTCCTGAAGCTCGAATTGCTTTAATTGGAGATGGACCGTACAGGGAGGAGCTGGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAGCTCTCTCAAGCATATGCCAGTGGAGATGTGTTTGTCATGCCTTCAGAGTCAGAGACACTTGGACTTGTTGTTTTGGAGGCCATGTCTTCAGGAATCCCTGTGGTGGGAGCGCGTGCTGGAGGCATTCCAGATATAATCCCCGCAGATCAAGAGGGTAAAACCGGCTGTCTCTACAATCCAGGGGATCTTGAAGACTGCTTGAGTAAACTGAGGCCTCTTTTGCTCAACAAGGAGTTGAGAGAAACCATGGGGAAAGCCGCACGTGATGAGATGGAGAAGTATGATTGGAAGGCAGCCACGCGAAAGGTTCGCAACGAACAATACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTATTGAGGCCCTTACAATGGCTTTCCAAACGTCTTTTCCCATCACCACAAGTCAGTCAACTATAGGTGATGCAAATAAAGGTTCCAAGCTTAGGCTGGTTACTTGTTTGCTTTGACTTAAACATAAGAACTTGNGTATTCTTTGGGATAAGTGTGTGGCTGATTGGTTTATGAAAAAAAATGTGTGGCTGATTGAGNGTAATGCATTCATTTTCTGAATATAATGGAGTGTACAATATGGTGACTTGTTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01572	14168	19258	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06119	SQD2	EC:2.4.1.-	Glycerolipid metabolism	map00561

Gene Ontology

biological_process
GO:0009058 biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001572s00035823.1	PF13579.1	Glyco_trans_4_4	130	285	3.30E-15
Glyur001572s00035823.1	PF00534.15	Glycos_transf_1	316	469	6.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.275
SRR1783600	control	4.151
SRR1783602	moderate drought stress	4.780
SRR1811619	moderate drought stress	4.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.991
DRR006520	Root Summer glycyrrhizin high producing strain	6.010
DRR006521	Root Winter glycyrrhizin high producing strain	0.857
DRR006522	Root Winter glycyrrhizin high producing strain	0.823
DRR006523	Root Summer glycyrrhizin low producing strain	7.291
DRR006524	Root Summer glycyrrhizin low producing strain	7.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.819

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.626
SRR2868004	Drought Stress (root)	19.435
SRR2967015	Control (root)	21.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.139
SRR9715740	Leaf	63.215
SRR9715741	Leaf	49.830
SRR9715739	Root	3.751
SRR9715742	Root	5.760
SRR9715743	Root	5.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.433
SRR8749028	MeJA induced 9h	1.990
SRR8749029	MeJA induced 9h	0.922
SRR8749030	Uninduced	0.465
SRR8749031	Uninduced	0.043
SRR8749032	Uninduced	0.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.156
SRR8400027	Control - Root	15.117