Gene detail

Gene detail information of Glyur001571s00028320

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26570.2	4.00E-97	calcineurin B-like 3
NR	XP_003617872.1	1.84E-131	Calcineurin B-like protein [Medicago truncatula]
Swissprot	tr\|Q75LU8\|CNBL3_ORYSJ	3.00E-123	Calcineurin B-like protein 3
trEMBL	tr\|B7FN44\|B7FN44_MEDTR	7.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:AFK45506.1}

Sequence

Transcript Sequence

>Glyur001571s00028320.1
TGCTCATACGTGTTGTGTCAGAGGCCAGTGTTGCACTCATTCCGTTCCAAGTTGTACTCCATCTGTCATCATCCTCCATATCACTTTCGCCACCCTCACAAAAGCGATTCGCTGCAACTACCGCGAGTTGCAATTGCAGTTCATACAAGACAACCCCTTTTTCCATAAAAACCCCTTCACTTCACTATTCATAACTTCATTCCCCAAAACTTCCACAATCTCTCTCTTTTTCGCTCATCCGTTAGCTCCAAGATCTTGGCATTTGGGATTGACCGGCAGAAATTGGAAATGGTTAAAAGTTATGGAGAGTTTTGATTTTCAACTGCAAGGAATATCATGTTGCAGTGCGTAGAGGGGTTTAAGCATCTATTTGCTCCTCTATTGCGGTGTTGTGACCTTGATTTATATAAGCAGTCAATAGGCCTTGAAGATCCCGAACTTCTTGCGAGGGAGACAGTGTATATTAAAAGGATGTCATTAGCATTGATGAACAAGAAAAGGAAAGAAACTATATGGATGCCATTTATTTTGCTACTGTACACAGTCAGTGTAAGTGAAATTGAAGCACTTTATGAGCTCTTTAAAAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGGTTAAGGCCATCATATACAACAATGACAACCAAAGTGGAGTATTTGATTTGTTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCAAATGCCCCTATTGATGAAAAGATTGAATGTANGTTTTTTGAAATTACCATATATTATCTTGTTTCAGTTTCCTTTCAATTGTATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACACTTGCTGAATCTGGCATGAACCTATCAGATGATGTTATAGAGAGTATAATCGACAAGACTTTTGAGGAAGCAGATACAAAGCATGACGGCAAGATTGACAAGGAGGAATGGAGAAATCTTGTTTTGCGCCATCCTTCACTTCTGAAGAACATGACCCTTCAATATCTGAGGGACATCACCACAACATTCCCAAGCTTTGTATTCCATTCACAAGTGGACGATACTTGAAGAAGCTTGAGTATTTACTTNATCATGTTGCTGCCTATGGTTTCAGTGCTTGTGGAGTGTGGACTACAGAGCCGCTTCTTATGTATAAAAGAATATTAAGAGGATATAGCAGAGAGATTTACTTACCTTACNTTGGTTATATTTCTTTGATAACGATATTTGGTTTTGTTTTTAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01571	39956	44585	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001571s00028320.1	PF13833.1	EF-hand_8	111	132	0.0002
Glyur001571s00028320.1	PF13499.1	EF-hand_7	162	225	2.80E-08
Glyur001571s00028320.2	PF13833.1	EF-hand_8	63	111	3.20E-09
Glyur001571s00028320.2	PF13499.1	EF-hand_7	141	204	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.193
SRR1783600	control	20.322
SRR1783602	moderate drought stress	15.639
SRR1811619	moderate drought stress	16.136

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.430
DRR006520	Root Summer glycyrrhizin high producing strain	25.882
DRR006521	Root Winter glycyrrhizin high producing strain	35.996
DRR006522	Root Winter glycyrrhizin high producing strain	34.745
DRR006523	Root Summer glycyrrhizin low producing strain	27.929
DRR006524	Root Summer glycyrrhizin low producing strain	27.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.746
SRR2868004	Drought Stress (root)	39.195
SRR2967015	Control (root)	40.100

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.095
SRR9715740	Leaf	19.690
SRR9715741	Leaf	20.958
SRR9715739	Root	8.050
SRR9715742	Root	15.389
SRR9715743	Root	15.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.434
SRR8749028	MeJA induced 9h	16.985
SRR8749029	MeJA induced 9h	19.300
SRR8749030	Uninduced	21.891
SRR8749031	Uninduced	16.307
SRR8749032	Uninduced	12.205

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.370
SRR8400027	Control - Root	44.337