Gene detail

Gene detail information of Glyur001571s00028316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26550.1	4.00E-73	Got1/Sft2-like vescicle transport protein family
NR	XP_004491532.1	3.03E-134	PREDICTED: protein transport protein SFT2-like [Cicer arietinum]
trEMBL	tr\|G7K4R6\|G7K4R6_MEDTR	6.00E-130	Got1/SFT2-like vescicle transporter family protein {ECO:0000313\|EMBL:AET00836.1}

Sequence

Transcript Sequence

>Glyur001571s00028316.1
GAACAGACTAACAGTAATCTCCAGAAAATCAACGAACCCAGTGCTGCTGCGGCCACTGCTCTCACATATTCAATTTTCCATCTCTTTCCCTTTTTTCTCAATTCTCACTCCCATCTCCTTAATAAGAAAGAGAGAACAAGGATGGTGTAGTGTTAATTAAATCAAAGAATGGAGGGGTGGTTCTCACGCAGTGACGATCAGCAGAAATCAGCAGCAGCAGCAGCAACCTCTTCTTCTTCGTCTTCCTCTTTGCTATCTGAATGGAACTCGTACACCTCATCACAGCAGAAGCAGGATGCCTCCTCCAATTCGGTGATCGCCTTNGATCTCGAATCCGCCGTTAGATCTGCCAACACCACTGTCACTGGCACCTTCAACGTGGTTTCTAAAAGTGTGAGAGATATACCTGGCAACTTCCAGTCTGCCACTAGTAATGTTCCTTCTGGGAAAGCACTCTTGTATTTTGGTTTGCTTTTGGCGAGCGGAGTCTTCTTCATTTTCATTGCATTTACCTTGTTCTTGCCTGTGATGGTGGTTATGCCCCAAAAGTTTGCTATATGCTTTACTCTTGGGTGTGGATTTATTATTGGATCATTCTTTGCTCTTAAAGGTCCAAAGAATCAGCTTGCTCACATGTTGTCAAAGGAGAGGCTCCCATTCACACTGGGTTTTATATGCAGTATGGTTGGTACCATTTACGTATCAATGGTGCGTCACAGCTACCTTCTCTCTGTTGTATTCTCTGTCGTACAGGTTCTCTCACTTGGATACTATTCTATATCATATTTCCCTGGTGGATCTGCTGGAATGAGATTTCTGACTTCTGCCCTAACCTCAAAAATAATGAATTGTTTTGGGAGGTGATTTGTTTTTGCCTTTGGTTGAGGGGAGGGGAGGGGAGGTCGGATCCGGACTTTGCCTATGGCCAGTTGAAACTTTGAACTGATCCATGAATATTGGCATTGCTGAGTTGAGAAGCATCATCTAACACTTCCTAAGATTTCAATGTTTGTTGCCACCTCTAAGGCTCTAAATGAGAAAATTGTTTGACGGCTCTTTGCCACGAGTTATGATCTTCATTGCATACATACGGGTATTAATACCGGCATTGGTATGGATACTGAGGGTTGGACAAAGTTTTTGAAACTAAGAGTACGGGAGGANATATCATATAAAAATATAACAATATATATAACATAAATAATAAACTATTGAAATCATAATATAAAATATAATTTTTATGGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01571	29323	33021	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001571s00028316.1	PF04178.7	Got1	105	219	3.00E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.643
SRR1783600	control	13.025
SRR1783602	moderate drought stress	10.105
SRR1811619	moderate drought stress	10.498

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.409
DRR006520	Root Summer glycyrrhizin high producing strain	8.851
DRR006521	Root Winter glycyrrhizin high producing strain	9.295
DRR006522	Root Winter glycyrrhizin high producing strain	9.102
DRR006523	Root Summer glycyrrhizin low producing strain	9.804
DRR006524	Root Summer glycyrrhizin low producing strain	10.646
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.144
SRR2868004	Drought Stress (root)	22.044
SRR2967015	Control (root)	23.198

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.969
SRR9715740	Leaf	12.425
SRR9715741	Leaf	16.430
SRR9715739	Root	12.838
SRR9715742	Root	17.383
SRR9715743	Root	12.387

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.803
SRR8749028	MeJA induced 9h	9.231
SRR8749029	MeJA induced 9h	5.047
SRR8749030	Uninduced	4.231
SRR8749031	Uninduced	2.434
SRR8749032	Uninduced	3.367

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.200
SRR8400027	Control - Root	30.959