Gene detail

Gene detail information of Glyur001571s00028315.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26540.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_003545087.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Glycine max]
COG	YP_004775215.1	3.00E-59	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGR3\|Y4265_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|I1M6E0\|I1M6E0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G01520.1}

Sequence

Transcript Sequence

>Glyur001571s00028315.1
AACCTATTACAAAAAATAATAATAAAAGAATATTAAAGAAGCTGGCTCATGTGTTCATAGCTTCTTCTCCTCCCCTATAAACAAATCATGTGTTTTCCCCCTCTACAATCCCAAAACAGATCACCAACCCTTCTCTTTCTTCTCTCAGCAATGTCTGGAACCTTAAGGATCCTGTCACTTTTTCCCAAAATCTTCTTCTCCCTCACCTTGCTTCTCTCAATAAACTCTCTTTTCTTTCCATGTTGTAACTCCCTTGATGAACAAGGCCAAGCTCTTTTAGCATGGAAGGAAAGTTTAAATAGTAGTTCAGATGCATTAGCATCTTGGAACCCTTCAAACCAAACAAGCCCATGCAACTGGTTTGGTGTGCACTGCAACTCACAAGGAGAGGTTGTGGAGATAAACCTTCAATCAGTGAACTTGAGAGGCTCATTAGTGCCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGGTTCTTGTCCTCTCTTCAGCCAACATCACAGGCATGATTCCAAGAGNAATTGGAGACTATAAAGAGCTCATTGCCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAGATTTGCAGGCTAAGCAAACTGCAAACTCTAGCTCTCCATGCAAACTCTCTTGAAGGCAAAATTCCATCCAACATAGGGAATCTATCAAGTCTTGTGAACTTGACACTCTATGACAATAAACTGAGTGGTGAAGTTCCAAAGAGTGTTGGCTCCTTAAGCAAGCTCCAAGTGTTCAGAGTAGGAGGGAATGCAAACCTTAAGGGTGAGGTTCCATGGGACATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGCAAACTTCCCTCTTCAATAGGGAACCTGAAAAGGATTCAGACCATAGCCATTTACACAACTCTTCTGTCAGGCTCTATCCCAGAAGAGATTGGGAATTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATTTCTGGTTCAATCCCACCCCAAATTGGAGAGCTCAACAAGCTTCAGAGTCTACTCTTATGGCAAAACAGTATTGTGGGAACAATCCCAGAAGAGCTTGGAAGGTGCACAGAGCTCAATGTCTTAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAATCAGTTTTGGAAAGCTGTCAAATCTCCAAGGGCTTCAGCTGAGTGTTAATCAGCTCTCAGGTATCATACCTCCTGAGATTTCAAACTGCACTTCTCTGACTCAGCTGGAAGTTGACAACAATGCTATTTCTGGTGAGATTCCTCCTGTTATTGGCAACATGAGAAACCTGAACCTGTTCTTTGCATGGAAGAACAAGCTAACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCTGGCACTTGATCTGTCTTACAACAACTTAACTGGTCCACTACCAAAACAACTATTTGGGTTGAGGAATCTCACCAAGCTGCTGCTTCTTTCCAATGACTTTTCAGGCTTGATACCACCTGAAATAGGTAACTGCACTAGTCTCTACAGGTTGAGGTTGAATCAGAATAGACTGGTTGGCACCATTCCATCTGAGATTACCAACTTGAAGAATCTGAACTTTTTGGACATGAGCAGCAATCATCTTGTAGGGAAGATTCCTCCAACAATATCCAGATGCCAAAATCTTGAGTTCGTGGACCTCCATTCAAATAGTCTCACTGGTTCAGTTCCAGATAATCTGCCAAAAGGCCTGCAGATAATTGACCTCTCAGACAACAGGCTAACAGGTGCACTGAGTCATTCCATTGGTTCATTGAGTGAACTAACCAAACTCAACTTGGGGAAGAATCAGCTCAGTGGAAGAATCCCAGCAGAGATCTTGTCTTGCTCTAAGCTCCAACTTCTAGACTTGGGAAGCAATGGTTTCTCTGGAAAGATTCCCAAGGAAGTTGGTCAAATTCCCTCACTTGAAATCTTTCTCAATCTTAGCTATAACCAGTTTTTTGGTGAAATTCCATCCCAGTTCTCTGGTCTTAGCAAACTTGGGGTGCTTGATCTATCTCACAACAAGCTCTCAGGGAACTTAGATGCCCTTTCTAGCCTTCAGAATCTTGTTTCCTTGAATGTTTCCTTCAATGAATTCTCTGGTGAATTGCCTAATACACCATTCTTCAGGAAACTCCCTCTCAGTGATCTCACTGCAAATAATGGTCTTTACATTTCCAGTGACAGAATGGTAGCCTCAGCCAAAGGCCATGCTTCCAGATTAGTCATGAAGATTATAATGTGCATTCTCTTAAGCACCAGTGCAATACTAGCACTTCTCACAATCCATGTATTGGTTCGTGCTCATATTACTAACAAAGCACTCATGGGAAATGAAAGTTGGGTGATGACTTTGTATCACAAGTTTGAATTCTCTATTGATGACATTGTCAGGAATATGACATCAGCCAATGTGANTGGGACTGGAAGCTCTGGAGTTGTGTACAAGGTAACAATTCCAAGTGGCCAAACACTAGCAGTTAAAAGGATGTGGTCATCAGAAGAGTCTGGTGCATTTGGTTCTGAAATTCAGGCTCTAGGTTCAATCAGGCACAAGAATATCGTCAAGCTTCTTGGTTGGGGATGCAGTAAGAACATGAAGCTGTTGTTTTATGACTACTTCCCTAATGGAAGCCTGAGCTCATTACTTCATGGTTCAGGAAAGCGGGGAAAAGCAGAATGGGAGACCAGATATCAAATCATGTTAGGCTTGGCTGAGGCACTTGCATATTTGCACCATGATTGTGTACCTTGTACATTCCATGGAGATGTCAAGGCCACCAATGTGTTATTAGGTCCTGGCTATCATCCTTACCTTGCTGATTTTGGCCTGGCAAGAATTGCAAGTGAAAATGGTGGTGATAGTACTAATTCCAAGCCAGTTCAAAGACCCCCCTACCTTGCTGGTTCCTATGGATACATGGCTCCTGAGCATGCATCAATGCAGCAGGTAACTGAGAAAAGTGATGTGTACAGTTATGGTGTGGTCCTACTTGAGGTGCTGACAGGAAGGCACCCATTAGACCCAACTCTACCNGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGGCTAGCAAAGGAGACCCATCTGAGATTCTTGACCCAAAGCTGAGAGCGAGGACTGACCCTACTATGCAACATGAGATNCTACAAACTCTAGCTGTATCATTTNTNTGTGTCAGTACCAAAGCTGATGAACGTCCCACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTCGNCCTGTTGTTGTTGAGGCCTCAAGCACAGATACTAAGAATGTAGTTTCACATGGATTTTCCAAGTTCTAACTATTCCTTTAACCTCTCTTATGGAATGCCAGTTAGAGGTGGCCAGAATTACTAGAGATATTCAAGTGTAATCTCAGATATGAAATGGTTATTATCTCAATCCATAATAAAAAGCATTCTAGAGCCTTTTACTCAATAACTCTCCCAAGTTCTCAGGCTAATTGGTTTCTCATCAATATGATATAAAAGATCTTGGCCACAATGATGACCTCTGTTTGTACTTTTAGTACCTAACATTTAAGTTTTGATGTTAGTGTATG

Protein Sequence

>Glyur001571s00028315.1
MCFPPLQSQNRSPTLLFLLSAMSGTLRILSLFPKIFFSLTLLLSINSLFFPCCNSLDEQGQALLAWKESLNSSSDALASWNPSNQTSPCNWFGVHCNSQGEVVEINLQSVNLRGSLVPSNFQPLRSLKVLVLSSANITGMIPRXIGDYKELIAIDLSGNSLFGEIPEEICRLSKLQTLALHANSLEGKIPSNIGNLSSLVNLTLYDNKLSGEVPKSVGSLSKLQVFRVGGNANLKGEVPWDIGNCTNLVMLGLAETSISGKLPSSIGNLKRIQTIAIYTTLLSGSIPEEIGNCSELQNLYLYQNSISGSIPPQIGELNKLQSLLLWQNSIVGTIPEELGRCTELNVLDLSENLLTGSIPISFGKLSNLQGLQLSVNQLSGIIPPEISNCTSLTQLEVDNNAISGEIPPVIGNMRNLNLFFAWKNKLTGKIPDSLSQCQDLLALDLSYNNLTGPLPKQLFGLRNLTKLLLLSNDFSGLIPPEIGNCTSLYRLRLNQNRLVGTIPSEITNLKNLNFLDMSSNHLVGKIPPTISRCQNLEFVDLHSNSLTGSVPDNLPKGLQIIDLSDNRLTGALSHSIGSLSELTKLNLGKNQLSGRIPAEILSCSKLQLLDLGSNGFSGKIPKEVGQIPSLEIFLNLSYNQFFGEIPSQFSGLSKLGVLDLSHNKLSGNLDALSSLQNLVSLNVSFNEFSGELPNTPFFRKLPLSDLTANNGLYISSDRMVASAKGHASRLVMKIIMCILLSTSAILALLTIHVLVRAHITNKALMGNESWVMTLYHKFEFSIDDIVRNMTSANVXGTGSSGVVYKVTIPSGQTLAVKRMWSSEESGAFGSEIQALGSIRHKNIVKLLGWGCSKNMKLLFYDYFPNGSLSSLLHGSGKRGKAEWETRYQIMLGLAEALAYLHHDCVPCTFHGDVKATNVLLGPGYHPYLADFGLARIASENGGDSTNSKPVQRPPYLAGSYGYMAPEHASMQQVTEKSDVYSYGVVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPSEILDPKLRARTDPTMQHEXLQTLAVSFXCVSTKADERPTMKDTVAMLKEIRPVVVEASSTDTKNVVSHGFSKF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01571	18025	22138	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001571s00028315.1	PF08263.7	LRRNT_2	57	97	3.70E-14
Glyur001571s00028315.1	PF13855.1	LRR_8	343	402	2.80E-08
Glyur001571s00028315.1	PF13855.1	LRR_8	557	614	4.90E-07
Glyur001571s00028315.1	PF00069.20	Pkinase	794	1062	8.50E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.544
SRR1783600	control	1.540
SRR1783602	moderate drought stress	3.525
SRR1811619	moderate drought stress	3.451

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.728
DRR006520	Root Summer glycyrrhizin high producing strain	1.746
DRR006521	Root Winter glycyrrhizin high producing strain	0.091
DRR006522	Root Winter glycyrrhizin high producing strain	0.089
DRR006523	Root Summer glycyrrhizin low producing strain	2.426
DRR006524	Root Summer glycyrrhizin low producing strain	2.447
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.894
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.887
SRR2868004	Drought Stress (root)	2.693
SRR2967015	Control (root)	2.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.914
SRR9715740	Leaf	0.826
SRR9715741	Leaf	0.759
SRR9715739	Root	1.447
SRR9715742	Root	1.737
SRR9715743	Root	1.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.020
SRR8749028	MeJA induced 9h	0.018
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.627
SRR8400027	Control - Root	2.961