Gene detail information of Glyur001568s00034354 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10660.1 | 2.00E-30 | calmodulin-domain protein kinase cdpk isoform 2 |
| NR | KHN17436.1 | 1.03E-39 | Calcium-dependent protein kinase SK5 [Glycine soja] |
| COG | YP_004582129.1 | 9.00E-08 | serine/threonine protein kinase [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|P28583|CDPK_SOYBN | 1.00E-40 | Calcium-dependent protein kinase SK5 |
| trEMBL | tr|I1K557|I1K557_SOYBN | 4.00E-40 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G33240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01568 | 48486 | 64337 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.2.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13412 | CPK | EC:2.7.11.1 | Plant-pathogen interaction | map04626 |
| Toxoplasmosis | map05145 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001568s00034354.1 | PF00069.20 | Pkinase | 10 | 90 | 2.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.366 |
| SRR1783600 | control | 1.680 |
| SRR1783602 | moderate drought stress | 3.706 |
| SRR1811619 | moderate drought stress | 2.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.318 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.556 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.982 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.154 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.493 |
| SRR2868004 | Drought Stress (root) | 2.319 |
| SRR2967015 | Control (root) | 2.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.557 |
| SRR9715740 | Leaf | 0.756 |
| SRR9715741 | Leaf | 1.018 |
| SRR9715739 | Root | 0.750 |
| SRR9715742 | Root | 1.080 |
| SRR9715743 | Root | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.725 |
| SRR8749028 | MeJA induced 9h | 0.439 |
| SRR8749029 | MeJA induced 9h | 0.916 |
| SRR8749030 | Uninduced | 0.638 |
| SRR8749031 | Uninduced | 0.478 |
| SRR8749032 | Uninduced | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.965 |
| SRR8400027 | Control - Root | 0.741 |