Gene detail

Gene detail information of Glyur001567s00029710

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21630.1	3.00E-106	chitin elicitor receptor kinase 1
NR	XP_003616958.1	0	LysM receptor kinase [Medicago truncatula]
COG	YP_002524068.1	1.00E-21	serine/threonine-protein kinase PksC [Thermomicrobium roseum DSM 5159]
Swissprot	tr\|D7UPN3\|CERK1_ORYSJ	1.00E-135	Chitin elicitor receptor kinase 1 (Precursor)
trEMBL	tr\|Q6UD73\|Q6UD73_MEDTR	0	LysM receptor kinase K1B {ECO:0000313\|EMBL:AES99916.1}

Sequence

Transcript Sequence

>Glyur001567s00029710.1
ATGGAACCCAGATTCAGGTTTTCACTTTCCTTCTTCTTGTCATTGGCCTCTACAATATCGTTCAGTGCAGAATCAAAGTGTAGCAGAGGTTGTGATTTAGCTCTAGCTTCCTACAATCAATGGAATGCTACAAACAAAGACACCATAATTAGAAACACTTCCCTTTTCTCCAGAAGGGTTAACATTCCCTTCCCTTGTGATTGCATCAATGGGGAGTTTCTGGGTCACACATTTCTCTCTGAGCTTCAGCCAGGGGAGACCTATACATCAGTTGCAAACAAGACCTTTTCCAATTTGACCACTGATGTGTGGATGCAAAGCTTGAACATTTATCCACCAACCAATATCCCTGATAACTGTTCCTGTGGGGACAGAGAGGTTTCCATGGATTATGGGTTGTTCACCACATACCCGCTCGGACCCGATGATACTTTGCAATATGCTTATGGCAGTGTTTCTCCCAAAATTGATGTATATGCTTTTGGGGTTGTTCTTTTTGAACTAATTTCTGCTAAAGAAGCTGTGATCAAGGGTGGTGAATCCGGTGTTGCATTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTATTTGATCAGCCAGATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGATGGCACAACTTGCCAAAGCATGTACAGAGAGTGATCCACAAAGACGTCCAAATATGAGCTATGTTGTGACCAAAATGGTAGTTATGTGCCCCTTCACCCGAGGTGAATATTCTAACCTTATTGTCCATTATTATCATCATGTGTATATTAAATATTACCAAAAGAAGAGGGAGAAAAATTTGATCTTGAATGATTCCATTGTGAACACAGCTCAAGTGTTAAAATCGCGAGAGTTTTCATACAAAGAACTAGCCAATGCCACAAATAACTTCAATATGGCTAATAAAATTGGTCAAGGTGGTTTTGGGGAAGTCTACTTTGCAGAGCTGAGAGGCGAGAAAACTGCCATCAAGAAGATGAAGATGAAAACATCAAAGGAATTTTGTGCTGAATTGAAAGTCTTGACTCATGTTCATCACTTGAATCTGGTACATTTGATTGGATATTGCGTTGAGGGTTCTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGACAGAATCTTCATGATTCAGAAAGAGAACCTCTGCCATGGTGTACCAGGGTGCAGATTGCTCTGGATTCAGCCAGAGGCCTTGAATACATTCACGGGCATACAGTGCCTGTGTATATTCATCGCGACATAAAGTCAGAAAATATATTATTAGACAAATGCTCTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTGGATGATGTTGGAAATTCAACTTTATCTAATAAAATGGCGGATACATTTGGTTACATGCCACCAGAATATGCGCGTGGCGGTGTCTTTCCTTCTCCCAAAATAGATGTCTATGCCTTTGGAGTTGTTCTTTATGAACTTATTTCTGCTAAAGAAGCTGTAATCAAAGGTGGTCCTGAAGTGAAAGGCCTTGTAGCATTGTTTGATGAAGTGTTTGATCATGAGCCAGATGATCCTACAGAAGGTCTTAAAAATCTGGTGGATCCTAGGCTTGGAGATAACTACTCAATTGATTCAGTTCACAAGATGGCACAACTTGGCAAAACATGTACAGAGAATGATCCACAAAGGCGTCCAAGTATGAGATCTGTTGTGGTTGCTCTCATGACACTTACTTCTACAACTGNGGATTGGGATATTGCATCCTTCTATGAAAATCCAGCTTTTGTAAATCTAATTGCAGAATCAAAGTGTAGCAGAGGTTGTGATTTAGCTTTAGCTTCCTATAAAATATTGTCCACTTCCAACCTGACATACATTTCAAAGATTATGGAATCCAAGGTTCTTTCAAAACCTCAAGATATTATCAGCTACAACAATGACACCATAAAACACAGCAGGGTTAANGTTCTCTTCCCTTGTGATTGCATAGATGGGGAGTTTCTGGGTCACACATTTCTCTATGAGTTTCAACCAGGGGAGACCTATACAACAGTTGCAAGCAAGACTTTTTCCAATTTGATCACTCATGTGTGGATGCAAAGCTTGAACATTTATCCACCAACCGATATACCCGATTTTGGATTGGTTAATGTCACTGTTAACAGTTCCTGTGGGAATAAAGAGGTTTCCATGGATTATGGGTTGTTCATCACATACCCTCTTACACCTGAGGATTCTTTGCAGTCAATTGCCAACAACACCAAACTTGAGCCTGAGATGAGTTGCTGCAAAAATACAACCCAGCCAAGGGAATGGCCTGGTTTATATTCCTGGGAAAGGTACATCCTTTCTTGCTTTGCTTCCGTGCTTTTTGGTCTTGTGATGAAAATGGAGTTTTTGTTCCTTTGTACACTAGATTCAGCTAGGGGNTTAACTGCTGCTGGAATATCTATAGGAGGAACATGTGGGCTTCTGTTACTAGCAATTTTTATATATATACTTTCAAAAGAAGAAAGGAGAGGAGGTCTGAATATTAATGTGTTTGAAACAAGTCTCCTGTTTATTCTTTACGATATTGGCGTTAAATTTATTATGGTGGACAAATCACCAGAGTTTTCATATCAAGAACTAGCCAATGCCACAAATAACTTCAGTTTGGATAACAAAATTGGTCAAGAGAGAGAACCTATTCCATGGTCTACACAGGTGCGAATTGCACTGGATATAGCGAGAGGCCTTGATTACATTCACGATCATTCAGTACCTGTATATATCCATCGCGACATAAAATCAGAAAATATTTTATTAAATAAGAACTTCACTGGGAAGATTGCAGATTTTGGATTAACCAAGCTGACTGATGTTGCAAGTTCATTTGCTAACACTAATCATNTGGCAGGCACATTTGGTTACATGCCACCAGAAAATGCATATGGANGTATTTCTCGCAAGATAGATGTCTATGCTTTTGGAGTGGTTCTTTATGAACTAATTTCTGCTAAAGCAGCTGTGATCAAGATCGATGAACCTAGTACTGAGTTCAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCATGATGAGGAAGATCTTAGAAAACTGGTGGATCCAAGGCTTGGAGATAACTATGCAATTGATTCCATTTGCAAGCATAAGGCAAGCTTCATTCGCCTATTTTTCCATCAGATGGCACAGCTTGCNAAAGCTTGCACAGACCAAGATCCAAAACTACGTCCAGCAATGAAAGCTGCTGTGCCAATGAAGCTAAAAAATGGGTTACACTTGTTCTTCCTGTTGCTGGACTGTGTTTTCTTCAACGTGGAATCCAAGTGTGTAAAGGGGTGTGATTTAGCCTTAGCTTCCTACGATGTCCCACCTATTTTTATGCTCCAAAACATAACACNCTTTATGCAGTCAAACCTTGTGTCCAATTCTGAAGTCATAATCAGCTACAACAAAGGCAAGATATTCAATGATAATAATATAATATCCTATCTCAGACTCAACATTCCATTCCCATGTGAGTGCATTGGAGGTGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTACAGGAGACACCTATAATTTGATTGCCAATCACTATTATGCAAAACTTACCACANTTGAGCTCTTGAAAAGGTTCAACAGATATGATTCAGATAGCATACCCCCTAATGCAAAGGTTAATGTCACAGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCAAAGGATTATGGGNTGTTTATTACTTTTCCCCTAAGGGATGGGGATACTTTGCAGAATATTGCNAGCCAGAGTAATCTTGATCCAGAGTTGCTGCAGAGTTACAATCCTGGTGTCAATTTTAGCAGAGAGGGTGGGATAGTTTTCATTCCAGGAAGAGATCAAGATGGAGATTATGTTCCCTTGTATCCTAGGTGGGGTCTAGCAAAGAGTACAGCTGTTGGTATATCTATAGCAGGAATATTAGGGCTTCTACTATTAGTAACTGGTATATATGTTAGATACTTCCAGAAGAAGGAAGGACAGAAAGCTAAATTGCCAGAAACTTCAATTGCACTTTCATCTCAAGATGGTAATGCCTCAGGTAGTGCAGAATATGAAACTTCAGGATCCACTGGGCCTGCTAATACTGCTAGTAGTACTGCTGCTGGTCTTACAAACATTATGGCGGCAAAATCAATGGAGTTCTCATNCCAAGAACTAGCCAAGGCTACAAATAACTTCAGTCTGGATAATAAAATTGGTCAAGGTGGATTTGGTGCTGTCTATTATGCAGAATTGAGAGGTAGAGATCCATTACCATGGTCTAGCAGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATACATTCACGAGCACACTGTGCCTGTGTATATCCATCGTGATGTGAAATCTGCAAATATATTGATAGACAAAAATTTCCGTGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTAGGGAACTCCTCNTTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCCAAAAATAGATGTGTATGCTTTTGGAGTTGTCCTTTATGAACTTATTTCTGCAAAGAATGCTATTCTGAAAACAGGTGAATCTGTTGCTGAATCAAAGGGCCTTGTAACCTTGTTTGAAGAAGCACTTAATCAGAGTGATCCTTTAGAAGGTCTTCGCAAACTGGTGGATCCTAGGCTTGGAGAAAACTATCCAATTGATTCTGTTCTCAAGATACATAAGATAAGACAA

Protein Sequence

>Glyur001567s00029710.1
MEPRFRFSLSFFLSLASTISFSAESKCSRGCDLALASYNQWNATNKDTIIRNTSLFSRRVNIPFPCDCINGEFLGHTFLSELQPGETYTSVANKTFSNLTTDVWMQSLNIYPPTNIPDNCSCGDREVSMDYGLFTTYPLGPDDTLQYAYGSVSPKIDVYAFGVVLFELISAKEAVIKGGESGVALKGLVALFDEVFDQPDPIEGLKKLVDPRLGDNYSIDSVFKMAQLAKACTESDPQRRPNMSYVVTKMVVMCPFTRGEYSNLIVHYYHHVYIKYYQKKREKNLILNDSIVNTAQVLKSREFSYKELANATNNFNMANKIGQGGFGEVYFAELRGEKTAIKKMKMKTSKEFCAELKVLTHVHHLNLVHLIGYCVEGSLFLVYEYIDNGNLRQNLHDSEREPLPWCTRVQIALDSARGLEYIHGHTVPVYIHRDIKSENILLDKCSRAKVADFGLSKLDDVGNSTLSNKMADTFGYMPPEYARGGVFPSPKIDVYAFGVVLYELISAKEAVIKGGPEVKGLVALFDEVFDHEPDDPTEGLKNLVDPRLGDNYSIDSVHKMAQLGKTCTENDPQRRPSMRSVVVALMTLTSTTXDWDIASFYENPAFVNLIAESKCSRGCDLALASYKILSTSNLTYISKIMESKVLSKPQDIISYNNDTIKHSRVXVLFPCDCIDGEFLGHTFLYEFQPGETYTTVASKTFSNLITHVWMQSLNIYPPTDIPDFGLVNVTVNSSCGNKEVSMDYGLFITYPLTPEDSLQSIANNTKLEPEMSCCKNTTQPREWPGLYSWERYILSCFASVLFGLVMKMEFLFLCTLDSARGLTAAGISIGGTCGLLLLAIFIYILSKEERRGGLNINVFETSLLFILYDIGVKFIMVDKSPEFSYQELANATNNFSLDNKIGQEREPIPWSTQVRIALDIARGLDYIHDHSVPVYIHRDIKSENILLNKNFTGKIADFGLTKLTDVASSFANTNHXAGTFGYMPPENAYGXISRKIDVYAFGVVLYELISAKAAVIKIDEPSTEFKSLVALFDEVIDHDEEDLRKLVDPRLGDNYAIDSICKHKASFIRLFFHQMAQLAKACTDQDPKLRPAMKAAVPMKLKNGLHLFFLLLDCVFFNVESKCVKGCDLALASYDVPPIFMLQNITXFMQSNLVSNSEVIISYNKGKIFNDNNIISYLRLNIPFPCECIGGEFLGHVFEYSAATGDTYNLIANHYYAKLTTXELLKRFNRYDSDSIPPNAKVNVTVNCSCGNSQVSKDYGXFITFPLRDGDTLQNIASQSNLDPELLQSYNPGVNFSREGGIVFIPGRDQDGDYVPLYPRWGLAKSTAVGISIAGILGLLLLVTGIYVRYFQKKEGQKAKLPETSIALSSQDGNASGSAEYETSGSTGPANTASSTAAGLTNIMAAKSMEFSXQELAKATNNFSLDNKIGQGGFGAVYYAELRGRDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGNSSFHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAILKTGESVAESKGLVTLFEEALNQSDPLEGLRKLVDPRLGENYPIDSVLKIHKIRQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01567	36376	61029	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001567s00029710.1	PF07714.12	Pkinase_Tyr	317	583	7.80E-43
Glyur001567s00029710.1	PF00069.20	Pkinase	897	1097	3.50E-28
Glyur001567s00029710.1	PF00069.20	Pkinase	1447	1554	1.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.671
SRR1783600	control	0.624
SRR1783602	moderate drought stress	0.273
SRR1811619	moderate drought stress	0.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.269
DRR006520	Root Summer glycyrrhizin high producing strain	0.238
DRR006521	Root Winter glycyrrhizin high producing strain	0.318
DRR006522	Root Winter glycyrrhizin high producing strain	0.308
DRR006523	Root Summer glycyrrhizin low producing strain	0.242
DRR006524	Root Summer glycyrrhizin low producing strain	0.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.739
SRR2868004	Drought Stress (root)	13.782
SRR2967015	Control (root)	12.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.162
SRR9715740	Leaf	0.037
SRR9715741	Leaf	0.251
SRR9715739	Root	0.063
SRR9715742	Root	0.185
SRR9715743	Root	0.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.314
SRR8749028	MeJA induced 9h	0.937
SRR8749029	MeJA induced 9h	0.937
SRR8749030	Uninduced	2.659
SRR8749031	Uninduced	2.482
SRR8749032	Uninduced	1.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.240
SRR8400027	Control - Root	1.563