Gene detail information of Glyur001567s00029704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21620.1 | 0 | ERD (early-responsive to dehydration stress) family protein |
| NR | BAF98597.1 | 0 | CM0545.360.nc [Lotus japonicus] |
| Swissprot | tr|B5TYT3|CSCL7_ARATH | 0 | CSC1-like protein At1g11960 |
| trEMBL | tr|B0BLA8|B0BLA8_LOTJA | 0 | CM0545.360.nc protein {ECO:0000313|EMBL:BAF98597.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01567 | 11579 | 16343 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001567s00029704.1 | PF13967.1 | RSN1_TM | 74 | 144 | 3.10E-19 |
| Glyur001567s00029704.1 | PF14703.1 | DUF4463 | 168 | 231 | 2.40E-16 |
| Glyur001567s00029704.1 | PF02714.10 | DUF221 | 253 | 576 | 9.20E-98 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.603 |
| SRR1783600 | control | 14.782 |
| SRR1783602 | moderate drought stress | 10.896 |
| SRR1811619 | moderate drought stress | 11.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.820 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.739 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.680 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.349 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.118 |
| SRR2868004 | Drought Stress (root) | 15.575 |
| SRR2967015 | Control (root) | 13.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.185 |
| SRR9715740 | Leaf | 2.700 |
| SRR9715741 | Leaf | 3.396 |
| SRR9715739 | Root | 2.562 |
| SRR9715742 | Root | 9.700 |
| SRR9715743 | Root | 9.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.792 |
| SRR8749028 | MeJA induced 9h | 11.196 |
| SRR8749029 | MeJA induced 9h | 4.423 |
| SRR8749030 | Uninduced | 5.986 |
| SRR8749031 | Uninduced | 1.170 |
| SRR8749032 | Uninduced | 0.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.182 |
| SRR8400027 | Control - Root | 23.087 |