Gene detail

Gene detail information of Glyur001565s00038215

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71890.1	2.00E-121	Major facilitator superfamily protein
NR	KEH25698.1	0	sucrose proton symporter 2 [Medicago truncatula]
COG	YP_457738.1	2.00E-15	sugar transporter [Erythrobacter litoralis HTCC2594]
Swissprot	tr\|Q9C8X2\|SUC5_ARATH	6.00E-155	Sucrose transport protein SUC5
trEMBL	tr\|A0A072U9C3\|A0A072U9C3_MEDTR	0	Sucrose proton symporter 2 {ECO:0000313\|EMBL:KEH25698.1}

Sequence

Transcript Sequence

>Glyur001565s00038215.1
ATGGAGACTTCATCTCCCACCAAGAACAATAATAATAACAATAATGTAGTCTCCTCCTTAGAGGTGACATCACAAGTTGGAGGGCCCAGCCCGATCAGGAAGATGGTCGCTGTGGCATCCATCGCGGCAGTCCAGCCCATAGTGGGCTACTACAGCGACCATTGCAACTCCCGCTACGGCCGCCGCCGCCCCTTCATCCTCTCCGGCGCCATCGCCGTCGCAGTAGCCGTCTTCCTAATCGGCTACGCGGCCGACCTGGGCCACTCGCTCGGCGACGACATCACCCAGAAGACCCGGCCGCGCGCGGTCGGGTTCTTCGTGGTAGGCTTCTGGATCCTGGACGTCGCCAACAACATGCTCCAGGGTCCATGCCGCGCCTTCCTCGCCGACCTCGCGGCCGGCGACCACCGAATGATGCGAACCGCCAACGGCTTCTTCTCCTTCTTCATGGCTGTCGGTAACATCCTCGGCTACGCCGCAGGGTCCTACAGAAAGCTCCACACCGTTGGTGGTAACATCCTCGGCTACGCCGGGGGGTCCTACAGCATGCTCCACAAGATCTTCCCGTTCACGGAAACCGACGCCTGCAACGTGTTCTGTGCCAACCTCAAGAGCTGTTTCTTCTTCTCCATCCTTCTCCTACTATCACTATCAATCTTCGCGCTCATCTACGTGGAAGACTCACCCGTCACGAAACCCGTGGTTGATGACGAGGACGGCCACGTGCAGATCACGTGCTTCGGGCAAATATACACTGCGTTGAGGGAACTCAAGAAGCCGATGTGGATGCTGATGATAGTAACCGCAATCAACTGGATCGGGTGGTTCCCGTTTTTCCTCTTCGATACAGATTGGATGGGTCGTGAGGTGTACGGTGGGGACGCGGGTGAGAAGGCGTACGATAAAGGAGTGCGCGTGGGTGCGTTGGGGTTAATGCTTCAGGCCGTGGTTCTCGGGCTTTGGGGAATCGTTAATTTCATTCTGTGTATTGGGATGGCAATGACGGTGGTTATTACTAAGGTTGCGGAACACGATAGACACGTGAGTGGTAGTGCCACCGTTGGGGATCCTTCTGATGGTGTTAAAGCTGGTGCCTTGCTCTTCTTCGCTGTTCTTGGAATCCCTCTCGCGCATCAATATACTCCAGCGCTTCAGGTGCAGGACAAGATGTTGGTAGCAGCATTAAGTGGGCCATGGGATGCATTGTTTGGTGGTGGTAATTTGCCAGCGTTCGTGGTGGGTGCAGTGGCAGCAGCAATCAGTGGCACATTGGCAATGGTTCTTCTTCCAACTCCAAAACCAGAAGAAGTTGCAAAAGCNTCATCTATTCCTGCAAGCAGTTTCCACTGATTTTCTAGCTACCTTACTTGTTTCATTTTCGGTTTTTTTTTTAAAAAATTTTGGCTTTGAAGAAAAACAAAAAAAAAATGTAGTAGCCCTTCGGAATTGAATTAAGCTGATGTGTGTGTATAGTTAGATATTAGAGAGAGCTATATAGACACCAAATGCTACAATTAATTGCCATGCATTTTTGTAGCAAATTAATTAAGCATGAATNTATCTCTTTTGGCTTTGGTTGTACATGGATCCCCCTATGGCTACTGCAGCTGGGTACCAACCCTTGTCCTCATCATGTATATTTTTTTGTCAGTTAATTAAGTGTGTAGCTGATCAGAAGAATATTGTAGTGAGGATATGTTCAATCACGCATAATGTAATGTATATATATTTACGTGGTTGGGTCGATGAAGAAGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01565	60610	64335	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001565s00038215.1	PF00083.19	Sugar_tr	35	313	2.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.110
SRR1783600	control	1.353
SRR1783602	moderate drought stress	0.186
SRR1811619	moderate drought stress	0.152

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.583
DRR006520	Root Summer glycyrrhizin high producing strain	0.723
DRR006521	Root Winter glycyrrhizin high producing strain	0.031
DRR006522	Root Winter glycyrrhizin high producing strain	0.061
DRR006523	Root Summer glycyrrhizin low producing strain	0.103
DRR006524	Root Summer glycyrrhizin low producing strain	0.104
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.001
SRR2868004	Drought Stress (root)	23.507
SRR2967015	Control (root)	12.892

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.449
SRR9715740	Leaf	154.776
SRR9715741	Leaf	198.227
SRR9715739	Root	10.473
SRR9715742	Root	23.539
SRR9715743	Root	24.818

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.020
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.015
SRR8749030	Uninduced	0.007
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.871
SRR8400027	Control - Root	18.588