Gene detail

Gene detail information of Glyur001565s00038214

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43650.1	4.00E-71	nodulin MtN21 /EamA-like transporter family protein
NR	XP_004516629.1	0	PREDICTED: WAT1-related protein At1g43650-like [Cicer arietinum]
Swissprot	tr\|Q6NMB7\|WTR7_ARATH	8.00E-98	WAT1-related protein At1g43650
trEMBL	tr\|G7KHQ6\|G7KHQ6_MEDTR	0	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:AES75278.1}

Sequence

Transcript Sequence

>Glyur001565s00038214.1
CAAAGAGATATTTGCACAAAATGAAGAGTATTTTGCTAAGCTGTATGGTGATGATGGAAAAACACAAACCTTATGTTGCAATGATCTTCATTCAGTTTGTATATGCAGGAATGGCTTTGTTGTCTAAGGCAGCAATTTCCAAAGGAATGAGCCCTTATGTGTTTGTTGTCTATAGACAACTCTTTGCTTCACTTGCCTTATCTCCATTTGCTTTCTTTGACAGTAAGCATGCTGCTCCTTTGTCATGCAACTTATTGTGCAAATTGTTTCTAGTTTCCCTTGTTGGGTTAACTGCAAGTTCAAACCTTTACTATGTTGCAATCAATTATACCTCTGCAACATTTGCAGCAGCCAGCACAAACACAGTCCCTTCCATTACTTTCATCGCTGCAGTTTTACTTCGGGTAGAAAGCATTTCCATAAAACATATGCATGGGCAGGCCAAGATTTTGGGTTCTGTTTTAAGCCTTTCAGGGGCCATAATATTTGCTTTAGTGAAAGGACCTCCAATAGATTTCATAAGGGGGAATCAAGAAAATGATCACAAGCATAGTACCTCTCACTCATTAACAATGGTTCACTCCAAAGGGGATTCCATTAAAGGCTCTCTCATGATGCTCTCAGCTAACACTGCTTGGTCCTTGTGGCTTATTTTGCAGGGATTTATTGTAAAGCAATACCCAGCAAAATTTCGCCTCACAATTATACAATGCTTTTTTAGCTTCATACAGTCAGGAATTTGTTATTGGATGCAAGTGTGCACTATAGAGATGAAAGGTCCGGTTTTCACAGCAATGTTCACCCCTCTAGCTCTTGTGATCACAGCAATTTTCTCAGCACTTTGCTGGAAAGAAACACTTTACTGGGGAAGTATTGGTGGCACTATTTTGTTGGTAGTTGGACTCTACAGTGTCTTGTGGGGGAAGAACAGAGAAGGTGGTGTAAAAGTGGAAAACCTTGAAGAAGCTGGACAAGCAAAAGTGGAAACTAGATTGGAGTGCATTATACAGCCCTGATTGACTAGACAAAATTTAAGGAAAAGATGTTCTTCCCATGTTGAATGCCCTTTTATGCATATCTTTACATTATCAGGTATATCTTGTCAACTTTTAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01565	30848	36195	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001565s00038214.1	PF00892.15	EamA	26	150	4.50E-13
Glyur001565s00038214.1	PF00892.15	EamA	222	299	7.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.519
SRR1783600	control	0.535
SRR1783602	moderate drought stress	1.338
SRR1811619	moderate drought stress	1.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.830
DRR006520	Root Summer glycyrrhizin high producing strain	6.428
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.036
DRR006524	Root Summer glycyrrhizin low producing strain	4.255
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.647

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.373
SRR2868004	Drought Stress (root)	1.344
SRR2967015	Control (root)	2.130

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.467
SRR9715740	Leaf	0.408
SRR9715741	Leaf	0.250
SRR9715739	Root	0.862
SRR9715742	Root	3.052
SRR9715743	Root	4.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.939
SRR8400027	Control - Root	1.207