Gene detail information of Glyur001565s00038212.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76900.2 | 3.00E-163 | tubby like protein 1 |
| NR | KDP30771.1 | 0 | hypothetical protein JCGZ_15200 [Jatropha curcas] |
| Swissprot | tr|Q75HX5|TLP8_ORYSJ | 0 | Tubby-like F-box protein 8 |
| trEMBL | tr|A0A067K3J2|A0A067K3J2_JATCU | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01565 | 15511 | 21245 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001565s00038212.1 | PF00646.28 | F-box | 53 | 105 | 6.80E-10 |
| Glyur001565s00038212.1 | PF01167.13 | Tub | 118 | 427 | 1.80E-115 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.278 |
| SRR1783600 | control | 16.350 |
| SRR1783602 | moderate drought stress | 18.685 |
| SRR1811619 | moderate drought stress | 18.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.047 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.360 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.117 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.209 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.243 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.946 |
| SRR2868004 | Drought Stress (root) | 51.513 |
| SRR2967015 | Control (root) | 67.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.319 |
| SRR9715740 | Leaf | 21.031 |
| SRR9715741 | Leaf | 30.546 |
| SRR9715739 | Root | 10.235 |
| SRR9715742 | Root | 21.277 |
| SRR9715743 | Root | 16.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.372 |
| SRR8749028 | MeJA induced 9h | 34.199 |
| SRR8749029 | MeJA induced 9h | 20.444 |
| SRR8749030 | Uninduced | 23.821 |
| SRR8749031 | Uninduced | 26.174 |
| SRR8749032 | Uninduced | 20.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.556 |
| SRR8400027 | Control - Root | 24.241 |