Gene detail

Gene detail information of Glyur001564s00035139

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54010.1	0	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
NR	AES88468.2	0	peptidyl-prolyl cis-trans isomerase, FKBP-type protein [Medicago truncatula]
COG	YP_004585346.1	8.00E-06	peptidyl-prolyl isomerase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q7DMA9\|PAS1_ARATH	0	Peptidyl-prolyl cis-trans isomerase PASTICCINO1
trEMBL	tr\|G7JM35\|G7JM35_MEDTR	0	Peptidyl-prolyl cis-trans isomerase, FKBP-type protein {ECO:0000313\|EMBL:AES88468.2}

Sequence

Transcript Sequence

>Glyur001564s00035139.1
CATTTTCATTTTTTTATTTTTATTCGATCGCATACGAATACGATTGACGAGAGGGTGCGTAATCGTTCCCCGCTTCTTAGAGCGAAGACTGAGTCTGAACTCTGAAGTGCAGTCAACCGAGTTGGCCCGATTCATTCCGGTTCGTCTTGTGTCTCTAGGTTTTGGGTGCTGAGAAAAATTCAGTGATTATGGCTGCTGTAACTGAAGATGCTGAACAGGAATTTGCTCCTCCAAAAAAGAAACCACCTTCTGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCTTTGATGAGGCCTGGTGGCGGTGATTCTGGACCTTCAGATGGTGACCAGGTTATCTATCNCTGCACAGTTAGAACTTTGGATGGAGTAATTGTGGAATCTACCCGATCAGAGCATGGAGGCACNGGCACACCGATAAGACATGTTTTGGGCAAAAGCAAGATACTATTGGGCTTGCTAGAAGGAATTCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGTCCTGTTTCCGCTCCTGACNGTTTTCCTAAGGATGATGAACTTCATTTTGAAATTGAGCTGATAGAGTTTTTCAAGGCCAAGGCAAGGATTACTGCAGTACTGGTTGTTACTGATGATTTGGGAGTTGTAAAAAAGGTANAAGTAGTNCGTGAAGGACAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAANACAGTTGCTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTTTTTACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGGATAGGAACAATGGCTCGGGAAGAGAAGGCTGTTATATATGTTACCAGTCAGTATTTAACTGAGTCTCCTCTGATGCCTGTTATACAAGATGATGAAGTCCAGTTTGAAGTGGAGCTTGTTCACTTCATTCAAGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAACGCCGGATTCGTGATGGAAAAGGTGAGTTTCCAATGGATTGCCCCCTTCATGACAGTCTACTTCGTGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGAGTACCAGAGGGATTTGAAATGTCTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGTCCCCCAGACTATGCTTATGATAAGTTTCCAAGGCCTTTAAATGTCCCTGAGGGTGCTCATATTCAATGGGAAATTGAACTTCTAGCTTTTGAAACGCCAAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAATGATGCTGAAAATATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTCATCCACATGATGACGAGGAAGGAAAAGTTTTTGCAGATACACGTAATTTGCTACATCTGAATGTTGCTGCTTGCTATCTGAAGTTGGGAGAATGCAGAAAGTCCATTGAGACATGCAATAAGGTTTTGGAAGCAAATCCTGCACACGTCAAGGGTCTATATCGTCGTGGAATGGCCTACATGACCGCTGGTGATTTTGAAGAAGCAAGGAGTGATTTCAACATGATGATGAAAGTCGATAAGTCAGCTGAATCAGATGCAACTGCAGCTCTTTCGAAACTGAAGCAAAAGGAGCAGAAGCCTGGAGAAATTGCAGAAGCTAAAGCTATTGAAGATGGAGATCAGATAACAAGTGAAAGCCAGAAGGATGGTGAGGTACATTGGGGGGACTCATCAGATGGGACAAGTTCGGAGGATACGCATGAAGAAGCTGCGCCCGATGCACATCGAATGGGTTGGTTCTCTCACTTTTGGCCTACTGGTAGCAGATTTTTTTCATCTCTTGGGCTTCAAAGATGTGCCATACTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01564	48042	64876	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001564s00035139.1	PF00254.23	FKBP_C	49	145	4.00E-10
Glyur001564s00035139.1	PF00254.23	FKBP_C	198	266	0.00013
Glyur001564s00035139.1	PF00254.23	FKBP_C	315	368	6.40E-06
Glyur001564s00035139.1	PF13414.1	TPR_11	387	468	2.70E-12
Glyur001564s00035139.1	PF07719.12	TPR_2	472	495	0.0005

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.417
SRR1783600	control	13.820
SRR1783602	moderate drought stress	12.832
SRR1811619	moderate drought stress	12.847

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.005
DRR006520	Root Summer glycyrrhizin high producing strain	17.723
DRR006521	Root Winter glycyrrhizin high producing strain	22.708
DRR006522	Root Winter glycyrrhizin high producing strain	22.140
DRR006523	Root Summer glycyrrhizin low producing strain	19.473
DRR006524	Root Summer glycyrrhizin low producing strain	18.980
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.387
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.008
SRR2868004	Drought Stress (root)	51.328
SRR2967015	Control (root)	52.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.920
SRR9715740	Leaf	27.965
SRR9715741	Leaf	29.289
SRR9715739	Root	2.239
SRR9715742	Root	11.439
SRR9715743	Root	8.729

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.962
SRR8749028	MeJA induced 9h	47.465
SRR8749029	MeJA induced 9h	25.918
SRR8749030	Uninduced	60.670
SRR8749031	Uninduced	95.494
SRR8749032	Uninduced	36.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.782
SRR8400027	Control - Root	39.743