Gene detail

Gene detail information of Glyur001563s00032833

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54070.1	2.00E-84	Ankyrin repeat family protein
NR	KEH37408.1	0	ankyrin repeat plant-like protein [Medicago truncatula]
COG	YP_003573231.1	4.00E-07	hypothetical protein Aasi_1865 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9C7A2\|Y3236_ARATH	7.00E-12	Ankyrin repeat-containing protein At3g12360
trEMBL	tr\|A0A072V7U6\|A0A072V7U6_MEDTR	0	Ankyrin repeat plant-like protein {ECO:0000313\|EMBL:KEH37408.1}

Sequence

Transcript Sequence

>Glyur001563s00032833.1
ATGTCCAGAGATATGACTATGGCAAACTCCACATCTGGCCACGAACGGTTACAGCGAGTTTCCCTTTACAATGCAGCTCTGACAGAAGAAGCTAGGGATAGATACCTAAAGCAATGTGTTCCCCTTCAGAAAGCAGCTCTGAGAGGTGATTGGAAAGAAGCCAGGAAAATACTAGAAGAAGACACAACATTGCTGAATTCTGCCATAACAAAGGGAGAGGTAACAGTCCTCCATATTGCAGTGAGCGCAAACCATCTTCACTTTGTGGAGGAGCTGGTAAAACTAATGCATCCTGATGACTTGGAATTGCAAGACAACAATGGAAACACTGCTTTTTGCTGTGCAGCAGCAGTTGGAAATGTGGAAATTGCGGAGACAATGCGCAAGAAAAATGGGGTGTTGCCAACAATCAGGGATGGAAAGGGTGTCACTCCTCTTCACATGGCTGCTTTACAAGGGAAAAGTGAAATGGCATGGTACCTATATCCTAAATCCATAGAAATATTTGAAGAAGGCGATTGGGTTTCGGTGTTCCACATCTGCATAAACTCCGGACTCTATGATTTAGCTCTTGAAATGCTAAATCAAAAGGAAACACTAGCTTTTGCTCGTGGAGGTAACAATGAGACAGGTTTGCATATATTGGCTCGAAAATATTCAGATTGTGGTTGCCGAAGTTTCCGATATCGTCCAATCCTCAAACTTATAAAACGCGTGTGGGATATAGTTCTTACCCTGGATGACACACACATGATGGAGGTCATAAGACAACCAACTCAAGTACCATTTATAGCCGCAGAGGTTGGAAATTTCGAGTTTCTATCTATGGTTGTGAGCACTTATCCTGATTTGATATGGGAACCAAATGGCTTCAGTATAATTCACGTTGCTGTTTTGCACCGCCATGCTAGTATCTTCAATCTGATACATGAAATAGGCCCTATCAAAGATTCCATAATAACTTTGGTGGATGATGAAGGAAATAATTTACTGCACTCTGTTGCGAAATTAGCACCGCCAGATCGACTCAATATAGTTTTTGGAGCAGCTCTTCAAATGGCACTTGAGTTGTCCTGGTTTGAGGAGGTGAAAAAGATAACATTACCTTCATACCTAGAAATGAGAAATTCTGAAGGCATTACTCCTCGCCAGCTATTTACAAGGGAGCATGAAGAGTTGCTTAAAAAGGGAGAGTCATGGATGAAGCAAACAGCAAACTCTTGCATGGTTGTCTCTACTCTAATCACTACTGGTGTGTTCTCTGCAACATTCAGCTTACCAGGTGGTAACAATGACAACACAGGATCTCCAAATTACTTGGAGAAACCATCATTCCTCGTATTTGCACTATCAAATGCAGTGGCAATGATCTCATCTTCCAGCTCAATCCTAATTTTTTTGTCCATCCTCATGTCACGATATATAGAGGATGATTTTCTCAGGTCACTGCCCTTGAAGTTGATATCTGGATTGGGAGCACTGTTTGTCGCAATAATCAGCATGATGGTGACATTTAGCAGTGCCTTCTTCATAACATATTATCATGGTTTGAAGTGGGTTCCTAGCTTCATTTCTGCACTTGCATTTTTACCAATACCCTTGTTTATCTTTCTACAGTTTTCTCTGTGGTCTGATATAGTATACTCGACCTACATTTGTAGTTCCCTCTTTTGGCGGAGTAAACGTATGATTCACTAGAATGATCAAGCTTGTGCTAAATATTTTTTTTTGATGAAGAGCTTGTGCTAAATATGTGAATGTATTTTATGAGTTAATGAGTTAATATGTCTCAAAATAATGATTACATTAGTATCCCGATACTAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01563	22891	29956	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001563s00032833.1	PF12796.2	Ank_2	77	168	1.90E-11
Glyur001563s00032833.1	PF13962.1	PGG	399	511	5.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.232
SRR1783600	control	0.231
SRR1783602	moderate drought stress	3.068
SRR1811619	moderate drought stress	3.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.241
DRR006520	Root Summer glycyrrhizin high producing strain	1.176
DRR006521	Root Winter glycyrrhizin high producing strain	2.346
DRR006522	Root Winter glycyrrhizin high producing strain	2.374
DRR006523	Root Summer glycyrrhizin low producing strain	0.060
DRR006524	Root Summer glycyrrhizin low producing strain	0.181
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.525
SRR2868004	Drought Stress (root)	0.821
SRR2967015	Control (root)	0.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.554
SRR9715740	Leaf	1.373
SRR9715741	Leaf	1.921
SRR9715739	Root	0.611
SRR9715742	Root	1.395
SRR9715743	Root	1.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.795
SRR8749028	MeJA induced 9h	1.124
SRR8749029	MeJA induced 9h	0.717
SRR8749030	Uninduced	3.036
SRR8749031	Uninduced	4.977
SRR8749032	Uninduced	4.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.803
SRR8400027	Control - Root	1.069