Gene detail

Gene detail information of Glyur001562s00037199.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19940.2	1.00E-163	oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding
NR	XP_004498172.1	0	PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic-like [Cicer arietinum]
COG	YP_421156.1	1.00E-163	N-acetyl-gamma-glutamyl-phosphate reductase [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|Q93Z70\|ARGC_ARATH	0	Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic (Precursor)
trEMBL	tr\|G7I708\|G7I708_MEDTR	0	N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256\|RuleBase:RU004038}

Sequence

Transcript Sequence

>Glyur001562s00037199.1
GTTCTACCAAAATCACCCTAAGTTTTGATTGTTTGAACACTCCCGACATCACAGTCGGAAGTGTGTTTCTGCCTATCTCAACTATCACTCTCTTTTATCAACAAAAAAAAAAACTATCACTCTCTCAATAGCTGTCACTCCTCTCCAGTTGCCCTAGCCCTACTGCCACTCGTTCCGCCGTTCGCCGTCCACGGTTCGTCTCCCTCATCCTCTGCTGCTGTTGGAGTGTTGCCCGGCTCTAAGCCTCACCCATCCACTCCCTGCCAGCTCGTCAGCTCAGCTCCTCCACCAGGCGCATTGCAGCTGAAATCCTTCTGGCAATNAACGCTGTTGTCTCCATCGTTATACAGTGAAGCAACCAAATTAACACGCTTGACGAGTTGGGCTAATTCACTATTTTTCTGGTTCACCACTAAAGTGTCACTAAAGTAAGCTTTGAGTTTGGCTTGTTTTGCTCTCAACTCACCGCACTTTGTTGAGAGCTAATTATCTGACCCCAAACCCTGCTGCCGGAGAAAATGAGCGCCACTGCATTCAGTTCGATCTGTTTTGACAGATGGCACAGTTGGAAGAAGGACTTGATAAAGCAACAGGATGTGAAGCCACATNTTAAGTGTTCAATCAAGAGTGGAAAACCAACATCACAAAAGACTGTTCGTGTCGGTGTTCTTGGAGCTAGTGGCTACACTGGTTCTGAGGTTCTTCGGCTTNTGGCAAATCATCCAGAATTTGGGGTTGCACTGATGACCGCTGATAGGAAAGCTGGCCAGCCAATCTCATCTGTATTCCCTCATTTGGGCACACAAGACTTGCCAGATTTGATTGCAATAAAGGATGCTAGTTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCGCATGGAACTACTCAGGAAATAATAAAAGGCCTTCCGAAGCACTTGAAGATTGTTGATCTTTCTGCAGATTTTCGACTAAGAGATATTTCTGAGTATGAAGAATGGTATGGTCAGCCACACAGGGCACCTGATTTGCAGAAAGAAGCTATATATGGATTAACAGAGATTTTAAAGGAGGAAATAAAGAATGCACGCCTAGTTGCTAATCCGGGTTGTTATCCAACTTCCATTCAACTTCCTCTTGTCCCACTGATAAAGTCTAATCTTATTCAGATTAGTAATATTATTGTTGATGCTAAATCTGGTGTGAGTGGAGCAGGGCGTAGTGCCAAAGAAAATTTATTGTTCACTGAAGTAACTGAGGGTATGAATTCTTATGGTGTTACCCGACATCGCCATGTTCCAGAAATTGAACAGGGACTCACTGATGCTGCACATTCAAAAGTAACCATTAGTTTTACCCCACACCTGATTCCAATGAGCCGTGGTATGCAGTCAACTATTTATGTGGAAATGGCTCCCGGAGTAAGGATTGAGGACTTGTACGAGCAACTGAAGATCTCATATGAGGATGAAGAATTTGTTGTAGTGTTGGAAAATGGAGTTATTCCTCGAACTCATAGCGTTAGAGGAACTAATTACTGTTTAATCAATGTTTTTCCTGACCGAATTCCTGGAAGAGCAATCATTATATCTGTGATTGATAACTTAGTCAAGGGAGCTTCAGGTCAAGCTTTACAAAACCTTAATTTGATAATGGGATTTCCAGAAAATTTAGGACTTCATTACCTGCCTCTGTTTCCTTAGAGTAGTTACCTTATCCAACAAGAGTGAGCCAGAGATTTTTATTTTTTTTAGCCTCTTTCTCTGGCATCCATTGTCCCATGTAATGTAACTTAGTAATGGGATTTTTATGTAGCTAATGGTGGTGCAGANTAATCGATTTCTTGGCTAGAGCCTACATTATTGTCACGGTTCCTTATGGGTTTTCATTCCAAAGGTTGGTACTTGTAGTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01562	26654	40530	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00145	argC	EC:1.2.1.38	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220

Gene Ontology

biological_process

GO:0006526 arginine biosynthetic process

GO:0008652 cellular amino acid biosynthetic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

GO:0046983 protein dimerization activity

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001562s00037199.1	PF01118.19	Semialdhyde_dh	47	184	1.90E-27
Glyur001562s00037199.1	PF02774.13	Semialdhyde_dhC	201	359	6.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.734
SRR1783600	control	15.984
SRR1783602	moderate drought stress	13.888
SRR1811619	moderate drought stress	13.874

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.943
DRR006520	Root Summer glycyrrhizin high producing strain	24.825
DRR006521	Root Winter glycyrrhizin high producing strain	11.761
DRR006522	Root Winter glycyrrhizin high producing strain	11.294
DRR006523	Root Summer glycyrrhizin low producing strain	17.817
DRR006524	Root Summer glycyrrhizin low producing strain	17.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.481
SRR2868004	Drought Stress (root)	25.778
SRR2967015	Control (root)	22.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.555
SRR9715740	Leaf	22.787
SRR9715741	Leaf	23.049
SRR9715739	Root	17.382
SRR9715742	Root	24.197
SRR9715743	Root	22.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.917
SRR8749028	MeJA induced 9h	23.532
SRR8749029	MeJA induced 9h	11.527
SRR8749030	Uninduced	7.107
SRR8749031	Uninduced	2.097
SRR8749032	Uninduced	3.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.412
SRR8400027	Control - Root	32.290