Gene detail information of Glyur001558s00033994 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 6.00E-12 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AAO23065.1 | 2.44E-54 | R 2 protein [Glycine max] |
| COG | YP_001869376.1 | 6.00E-07 | hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|O82500|Y4117_ARATH | 8.00E-17 | Putative disease resistance protein At4g11170 |
| trEMBL | tr|Q84ZV9|Q84ZV9_SOYBN | 9.00E-55 | R 2 protein {ECO:0000313|EMBL:AAO23065.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01558 | 1812 | 9396 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001558s00033994.1 | PF00931.17 | NB-ARC | 50 | 160 | 6.70E-18 |
| Glyur001558s00033994.2 | PF00931.17 | NB-ARC | 50 | 160 | 5.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.019 |
| SRR1783600 | control | 0.038 |
| SRR1783602 | moderate drought stress | 0.931 |
| SRR1811619 | moderate drought stress | 0.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.898 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.543 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.208 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.131 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.426 |
| SRR2868004 | Drought Stress (root) | 2.162 |
| SRR2967015 | Control (root) | 4.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.359 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.798 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.914 |
| SRR9715743 | Root | 0.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.576 |
| SRR8749028 | MeJA induced 9h | 5.941 |
| SRR8749029 | MeJA induced 9h | 9.156 |
| SRR8749030 | Uninduced | 12.302 |
| SRR8749031 | Uninduced | 17.230 |
| SRR8749032 | Uninduced | 10.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.484 |
| SRR8400027 | Control - Root | 0.661 |