Gene detail information of Glyur001557s00038544 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30280.1 | 4.00E-56 | RNA-directed DNA methylation 4 |
| NR | KEH22150.1 | 2.90E-170 | hypothetical protein MTR_7g033700 [Medicago truncatula] |
| Swissprot | tr|Q8GYP3|RDM4_ARATH | 8.00E-87 | RNA-directed DNA methylation 4 |
| trEMBL | tr|A0A072U8F6|A0A072U8F6_MEDTR | 1.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:KEH22150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01557 | 31790 | 38809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.391 |
| SRR1783600 | control | 3.424 |
| SRR1783602 | moderate drought stress | 4.477 |
| SRR1811619 | moderate drought stress | 4.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.738 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.011 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.496 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.649 |
| SRR2868004 | Drought Stress (root) | 9.960 |
| SRR2967015 | Control (root) | 11.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.970 |
| SRR9715740 | Leaf | 10.908 |
| SRR9715741 | Leaf | 12.013 |
| SRR9715739 | Root | 1.113 |
| SRR9715742 | Root | 4.489 |
| SRR9715743 | Root | 5.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.375 |
| SRR8749028 | MeJA induced 9h | 14.403 |
| SRR8749029 | MeJA induced 9h | 19.230 |
| SRR8749030 | Uninduced | 18.688 |
| SRR8749031 | Uninduced | 9.291 |
| SRR8749032 | Uninduced | 7.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.271 |
| SRR8400027 | Control - Root | 10.114 |