Gene detail

Gene detail information of Glyur001556s00043257.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75560.2	2.00E-04	zinc knuckle (CCHC-type) family protein
NR	XP_004517077.1	6.33E-159	PREDICTED: uncharacterized protein LOC101491670 [Cicer arietinum]
Swissprot	tr\|P31843\|RRPO_OENBE	2.00E-15	RNA-directed DNA polymerase homolog
trEMBL	tr\|Q2HW87\|Q2HW87_MEDTR	4.00E-131	RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein {ECO:0000313\|EMBL:ABD28293.1}

Sequence

Transcript Sequence

>Glyur001556s00043257.1
ATGATGAAAGTCCTAAGTGCACAGGTATTGGACATGCAGAAGAAATTCGAAGATCAAGAGAGGCAGTTTCAGGATCAAAGGGACAAGGAGGCAAATACAACACCTGAGAGACAAGCACTTGATAATATTCCTTGCATTCCTAGTGCCAAGGATAGTTGCACTCTTGCATCGAATACCATTCCAGAGGGAGTGACCTCGAATGCTAAGTTTTATCTATCATCCCCTTATCGCGTGGTGGTGGTGGAAAAGTTGTTTTATGAGCCAGATGCCAACCTACCAGTACCTATTAAGGAAGATGATTCGACAGTACTTAGCGATTCAATAGGTGCTTTTGTGGCATGGCCACTCAACCTCATAGCTATAGATGGTGTGGTCCCAACAAAGGAACCAAGAAGCAAAGGGACCATTGGGAAGAAGAACACAACCAAGGAAAAAATAGCCAAAGGGTCCACAAATGGGTCAGTGGCGAAGACGTCAAAGCAAAAAGGAAAAGATGTTGTAGAGTTCGGACCTCCTGTCAATCTTTATCTGTATCAGCATTTGGCATACTTGAACGTACATGTAAATACAAAGATGAAAAGAGGCGGGGATCCATTGGTGGCACACATGATGAAAGACATATTCGGTGACGAGTGTACCGACTTTCTTAATGTAGATGAGATTAACGAAGTTCTTCAACATGGGTGGTTAGGCGCCTCTATTATCTCCAATGAGGTGGAAAAGAAGTTAGTTCTTGCACCATACAACACAAGGGAACATTGGGTGTTGCTTGCCATTAATATCAAGGAGGGGATGATATTTTATTTGGATTCATTGCATGGTGATCCTAACAATTATTCTGAGATGGTGGAACTGTTCAACAAGCAACTTAATAGCATAGATTGTGGGTATTATGTGTTGCAATTCATGAAGGAGATTATATCTTGTTCTCAATCTATGATCCCAGACAAGTATTTTCCTGGCTACAGGAGTTATACTTATTCTTCAGATAAGCTAAATGAGCTCAAAGACGAATGGTGTAGCTTCAAGTCACTTGGACTAACACATTGTGCTGAGGAAGTTAAGGTACCCTACGCCACTTATCTGTTGATTGGTGATGTGGAGTACTGGTGGAAGAGAGTGCAACAGTTACTGGAGGCTGAGCACCAGAGTGCTAGAACCCAGAAAGAACTGGAATTTCTGAGTCTACAGCAGAAGGAGATGATTGTAGATGCTTATACAACAAAGTTTGAAACCCTGGCTAAGTATTTTCATTTCTTTCAGCTTCAACCTGATGAAGGTTGGAAGTGTGAGAGGTTCGGAAAGGGATTACGATATGAGATTAAGGAAGCGGTATCACCTCTGGAGATCCGTCAGTTTCAACCTTTGGTGGAAAAGTGTAGGAAGATAGAGATTCTGAAAAAGGAGAGTGATAAGGAGTTTAGGCCACAGGATCAGAAGGGAAGACAATTCCAGAGAAAACCTTATGCAAGACTTGGAAACTTTGGGAATCAACACCAGAACCGCAGTGTAGCATCTGCTGGTTGGAGTGGAAACCGTGGAAATCAAGGGCTGAATGAGATTAGGTGTTTCAATTGTGGAAAAACAGAACATTACTCTACAAGCTACAATAAAAAAGGAGTGACTTGTTTTCGATGTGGGAAGATTGGACATACGTCTAAAGATTGCAGGGCACCGAAGTCAGAACCAACAGTGAATAATATGCAGGCAGTGAGGCCAAGAACAAAGGGACGCGTTTATACCCTGAGTGGCCTTGAGGCTTCGAAATCGGATGATCTCATACAAGGTACATGCGACATAGCTGGCTATCCTTTAATTGTACTGTATGATTCAAGCGCAACCCATTCGTTTATATCTTTTGATTTTGTGAAACGGTTGAATTTGTCTACTTCTTTGAAGTCATTTGATTTGGTTGTTTCCTTACCTATTGTTGAACTAGTCATTGTAAATACAATCTGTTTGAATTGTCTGGTCACTATTCTTGGTAAGAAATACCATATAGACTTAGTGTATTTACCTTTGGTCCAATTAGATATTGTTTTAGGAATGAATTGGTTGTATGTCAATCATGTTCTTTTAGATTGTGCCAATAAGACCTTAGTTTTTCTTAATTCTGGAGTTTCTGGACTTATGTCTGCCAACCAAGTGAAAGTTTCTTTGAAAGAAAGAGCAAAGAGATACATGTTATTTTCCTTGTTGAAATTCGAGAGTGAGAAAGAATTGAATAATGTGTCAGTAGTTAGAGAATTCTCCGAAGTGTTTCCAGAAGATGTCCCAGGTTTGCCACCTGTGAGAGAGATAGAGTTTACCATAGACCTAGTACCCGGATCAGGTCCAATTTCCATGGCTTTGTATAGAATGTCGCCAATGGAATTTGCCGAGATGACAAAGCAGTTAGACGATTTATTGTCTAAGCAGTTTATAAGATCAAGTGTTTCTCCGCGAAGAAGAAAGATGCTGGTGAAGAAGAAAGATGGAACTTCTAGGTTGTGTGTGGATTATAGGCAGCTGAATAAGATAACGATTAAGAATAAATATCATTTGCCACATATTGATGATTTGATGGATCAATTGCGTGGGGCTGCTATTTTCTCTAAGATAGATCTAAGAGCCGGGTATCATCAGATTAGAGTGAAGACTAGGGATATATCTAAGACTACTTTTAGAACCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01556	35878	40838	+

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0003676 nucleic acid binding

GO:0008234 cysteine-type peptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001556s00043257.1	PF02902.14	Peptidase_C48	240	277	1.90E-06
Glyur001556s00043257.1	PF00098.18	zf-CCHC	522	533	0.0047
Glyur001556s00043257.1	PF00098.18	zf-CCHC	542	557	1.90E-06
Glyur001556s00043257.1	PF08284.6	RVP_2	575	703	1.90E-21
Glyur001556s00043257.1	PF00078.22	RVT_1	821	881	0.00018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.003
SRR1783602	moderate drought stress	0.023
SRR1811619	moderate drought stress	0.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.027
DRR006522	Root Winter glycyrrhizin high producing strain	0.054
DRR006523	Root Summer glycyrrhizin low producing strain	0.225
DRR006524	Root Summer glycyrrhizin low producing strain	0.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.106
SRR2868004	Drought Stress (root)	0.109
SRR2967015	Control (root)	0.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.055
SRR9715740	Leaf	0.006
SRR9715741	Leaf	0.074
SRR9715739	Root	0.030
SRR9715742	Root	0.007
SRR9715743	Root	0.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.573
SRR8749028	MeJA induced 9h	0.689
SRR8749029	MeJA induced 9h	0.470
SRR8749030	Uninduced	0.340
SRR8749031	Uninduced	0.140
SRR8749032	Uninduced	0.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.111
SRR8400027	Control - Root	0.121