Gene detail

Gene detail information of Glyur001555s00040756.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28480.1	1.00E-34	Oxoglutarate/iron-dependent oxygenase
NR	XP_003618430.1	2.81E-45	Prolyl 4-hydroxylase subunit alpha-2 [Medicago truncatula]
COG	YP_004753320.1	7.00E-12	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|Q8L970\|P4H7_ARATH	2.00E-41	Probable prolyl 4-hydroxylase 7 (Precursor)
trEMBL	tr\|B7FKS2\|B7FKS2_MEDTR	1.00E-45	Uncharacterized protein {ECO:0000313\|EMBL:AFK35284.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01555	48612	49793	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001555s00040756.1	PF13640.1	2OG-FeII_Oxy_3	2	87	5.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.285
SRR1811619	moderate drought stress	0.592

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.079
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.361
SRR8749028	MeJA induced 9h	0.204
SRR8749029	MeJA induced 9h	0.654
SRR8749030	Uninduced	1.187
SRR8749031	Uninduced	1.956
SRR8749032	Uninduced	3.163

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.178
SRR8400027	Control - Root	0.246