Gene detail information of Glyur001554s00031228 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80830.1 | 3.00E-42 | natural resistance-associated macrophage protein 1 |
| NR | XP_004502516.1 | 2.93E-83 | PREDICTED: metal transporter Nramp5-like [Cicer arietinum] |
| COG | YP_826856.1 | 8.00E-36 | Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|Q0D7E4|NRAM1_ORYSJ | 1.00E-63 | Metal transporter Nramp1 |
| trEMBL | tr|I3SH64|I3SH64_MEDTR | 5.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:AFK39606.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01554 | 48338 | 50970 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001554s00031228.1 | PF01566.13 | Nramp | 67 | 185 | 2.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.316 |
| SRR1783600 | control | 0.279 |
| SRR1783602 | moderate drought stress | 0.260 |
| SRR1811619 | moderate drought stress | 0.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.156 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.758 |
| SRR2868004 | Drought Stress (root) | 30.196 |
| SRR2967015 | Control (root) | 26.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.072 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.042 |
| SRR9715742 | Root | 0.450 |
| SRR9715743 | Root | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.378 |
| SRR8749028 | MeJA induced 9h | 3.616 |
| SRR8749029 | MeJA induced 9h | 0.505 |
| SRR8749030 | Uninduced | 0.472 |
| SRR8749031 | Uninduced | 0.130 |
| SRR8749032 | Uninduced | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.173 |
| SRR8400027 | Control - Root | 3.891 |