Gene detail information of Glyur001554s00031227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80830.1 | 5.00E-74 | natural resistance-associated macrophage protein 1 |
| NR | XP_003602053.1 | 1.04E-174 | Metal transporter [Medicago truncatula] |
| COG | YP_826856.1 | 6.00E-36 | Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|Q8H4H5|NRAM5_ORYSJ | 6.00E-134 | Metal transporter Nramp5 |
| trEMBL | tr|G7J4Z1|G7J4Z1_MEDTR | 4.00E-175 | NRAMP metal ion transporter 6 {ECO:0000313|EMBL:AES72304.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01554 | 44716 | 48065 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001554s00031227.1 | PF01566.13 | Nramp | 1 | 110 | 3.00E-28 |
| Glyur001554s00031227.1 | PF01566.13 | Nramp | 122 | 202 | 2.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.073 |
| SRR1783600 | control | 1.239 |
| SRR1783602 | moderate drought stress | 1.021 |
| SRR1811619 | moderate drought stress | 0.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.999 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.813 |
| SRR2868004 | Drought Stress (root) | 42.792 |
| SRR2967015 | Control (root) | 31.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.051 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.202 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 0.752 |
| SRR9715743 | Root | 0.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.801 |
| SRR8749028 | MeJA induced 9h | 4.990 |
| SRR8749029 | MeJA induced 9h | 2.530 |
| SRR8749030 | Uninduced | 2.464 |
| SRR8749031 | Uninduced | 0.740 |
| SRR8749032 | Uninduced | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.513 |
| SRR8400027 | Control - Root | 6.196 |