Gene detail

Gene detail information of Glyur001554s00031225

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15960.1	5.00E-47	NRAMP metal ion transporter 6
NR	XP_004502502.1	2.55E-122	PREDICTED: metal transporter Nramp5-like [Cicer arietinum]
COG	YP_006872812.1	3.00E-25	Manganese transport protein mntH [Emticicia oligotrophica DSM 17448]
Swissprot	tr\|Q8H4H5\|NRAM5_ORYSJ	2.00E-89	Metal transporter Nramp5
trEMBL	tr\|V7AV29\|V7AV29_PHAVU	5.00E-119	Uncharacterized protein {ECO:0000313\|EMBL:ESW09444.1}

Sequence

Transcript Sequence

>Glyur001554s00031225.1
ATGATGCAACAGCAAGAGCAAAGAGCGAGTGATAACTCTGCATCGCGGGTTAATGGAGGTAGCAACCGCATTGTGGCCGTCAATGTGACTCCCTCTAACAACCCTCACACTCATGCCTCTTCATCACACCATGAGTCACAGAAACCTGGGTGGAAAAAGTTCTTGTCATATGTGGGTCCCGGTTTCCTCGTCTCCTTGGCTTACCTTGATCCTGGAAACAGAAAACACCTTTCAGAAATATGCAAAGCTGAGTATCCATTATTTGTCAAATACTGCTTATGGATATTNGCCGAGCTTGCTGTCATAGCTGCAGACATACCCGAAGGGCACAATCTGTTCCTCCACTCTGCTTTGGTGTTGTCTAGAAAAGTACCAGGTTCTGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATTGAGAGTGGATTCGCTCTGTTTGTGGCATTTTTAATCAATGTTGCAATGGTTTCTGTGTCGGGCACTGTTTGCTCTGCCGAAAACCTTTCTTCAGACNATAACAACCGCTGCAGCGATCTCACCCTTAACTCTGCTTCTTTCCTTCTTAAGAATGTGTTGGGACGATCGAGCTCAACAGTTTATGCCATAGCACTGCTAGCTTCAGGACAAAGCTCTGCCATCACTGGAACCTATGCAGGGCAATACATCATGCAGATGAAAAAATGGACTAGGAACTTGGTGACTAGGCTTATTGCCATAACACCTAGTCTTATTGTTTCTATCATTGGTGGTTCTTCTGGGGCTGGAAGGCTTATCATCATTGCATCGATCATTATCTTCTCATGGATACTGGGATTGGGGATCATTGGTATCAATGTGTACTACCTCATTACAGCCTTTGTGGTTATCTACCTAACCTTCAGAAAAGACACTGTTAAAACATTTATTGAGACAAAGGATGACCCAGCAGCAATACAATCCCATGTGGAAAAGGGGTTTCTAAATGATGGTCGGTTAGAGTTGAGTGCTGCTCCTTACAGAGAAGATTTAGCTGATATCCCACTACCAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01554	29206	36384	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001554s00031225.1	PF01566.13	Nramp	110	265	7.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.022
SRR1783600	control	0.062
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	296.622
SRR2868004	Drought Stress (root)	115.624
SRR2967015	Control (root)	54.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.654
SRR8400027	Control - Root	17.841