Gene detail information of Glyur001551s00039803 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05365.1 | 5.00E-16 | Heavy metal transport/detoxification superfamily protein |
| NR | XP_006435837.1 | 2.96E-33 | hypothetical protein CICLE_v10033238mg [Citrus clementina] |
| Swissprot | tr|O82089|CCH_ARATH | 1.00E-11 | Copper transport protein CCH |
| trEMBL | tr|V4T771|V4T771_9ROSI | 1.00E-33 | Uncharacterized protein {ECO:0000313|EMBL:ESR49077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01551 | 51905 | 52684 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001551s00039803.1 | PF00403.21 | HMA | 7 | 62 | 3.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.839 |
| SRR1783600 | control | 21.217 |
| SRR1783602 | moderate drought stress | 10.924 |
| SRR1811619 | moderate drought stress | 10.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.620 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.325 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.939 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.604 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.414 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.769 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.930 |
| SRR2868004 | Drought Stress (root) | 14.071 |
| SRR2967015 | Control (root) | 12.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.601 |
| SRR9715740 | Leaf | 4.368 |
| SRR9715741 | Leaf | 3.782 |
| SRR9715739 | Root | 2.103 |
| SRR9715742 | Root | 4.949 |
| SRR9715743 | Root | 3.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.643 |
| SRR8749028 | MeJA induced 9h | 17.825 |
| SRR8749029 | MeJA induced 9h | 28.633 |
| SRR8749030 | Uninduced | 68.253 |
| SRR8749031 | Uninduced | 104.611 |
| SRR8749032 | Uninduced | 57.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.574 |
| SRR8400027 | Control - Root | 18.906 |