Gene detail information of Glyur001551s00039800 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_006592413.1 | 2.81E-07 | PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Glycine max] |
| trEMBL | tr|K7LU49|K7LU49_SOYBN | 1.00E-07 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11810.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01551 | 4642 | 9382 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.092 |
| SRR1783600 | control | 2.627 |
| SRR1783602 | moderate drought stress | 15.167 |
| SRR1811619 | moderate drought stress | 16.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.026 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.168 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.996 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.458 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.046 |
| SRR2868004 | Drought Stress (root) | 0.017 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.283 |
| SRR9715740 | Leaf | 0.051 |
| SRR9715741 | Leaf | 17.129 |
| SRR9715739 | Root | 0.063 |
| SRR9715742 | Root | 8.057 |
| SRR9715743 | Root | 5.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.379 |
| SRR8749028 | MeJA induced 9h | 3.816 |
| SRR8749029 | MeJA induced 9h | 1.365 |
| SRR8749030 | Uninduced | 1.777 |
| SRR8749031 | Uninduced | 0.809 |
| SRR8749032 | Uninduced | 0.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.758 |
| SRR8400027 | Control - Root | 55.905 |