Gene detail

Gene detail information of Glyur001547s00040891

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26760.1	8.00E-102	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_006598999.1	1.30E-179	PREDICTED: short-chain dehydrogenase reductase 2a-like isoform X2 [Glycine max]
COG	YP_289531.1	1.00E-58	short-chain dehydrogenase/reductase (SDR) family protein [Thermobifida fusca YX]
Swissprot	tr\|Q9SCU0\|SDR2A_ARATH	6.00E-79	Short-chain dehydrogenase reductase 2a
trEMBL	tr\|I1MLA9\|I1MLA9_SOYBN	5.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G05400.1}

Sequence

Transcript Sequence

>Glyur001547s00040891.1
AGCTTCTCCTATATACTCCCTCCCTTAAATACACTCATCAACCTTTCTCTTCTCTCCGTGCTTTCAAATTAACCCAAGATCCGCCAAAGGTCAACCCTCTTTGTTGTTTCGCTCAGATCTTCTTCTCCTCATCCTCACTATGCTCCGAACACTAGCTAGGGAGTACTTCAAGCTCACCACCCTCAGTACCAATGGTTTGCTTCAAAAACGCAGCGGCAGATTCTATGCAACGGTTGGTGGAAGAAGCAGGTTGGAGGGAAAAGTGGCACTCATAACAGGATCAGCAAGTGGACTTGGAAAGGCCACGGCCCATGAATTCGTCCAACATGGGGCCCAAGTCATCATTGCTGATAATGACACTGAACTTGGGCCACAAGTGGCAAGAGAATTGGGCCCTTCAGCCCGCTTTGTTGAATGTGATGTCACTGTTGAGGCCCAAATAGCACAAGCCGTGGATGCTGCAATGGCCCACTATGGCAAATTGGACATAATGTACAACAATGCTGGCATCACAGGCCCAACANTCCCACCAAGCATAGTGGATCTGGACCTTGATGAATTCGATAGGGTCATGAGAATCAATGTCAGGGGAATGATTGCAGGGATAAAGCATGCGTCCCGGGTCATGATACCCGTTGGATCTGGGTCCATTCTATGCACCTCCAGCATAAGTGGGCTTATGGGTGGGCTTGGGCCTCACCCATACACAATATCAAAGTTTGCAATACCTGGGGTGGTGAAATCGGTGGCCACTGAGCTGTGTAGAGCTGGGATCAGAGTTAATTGCATATCCCCAGCTCCAATCCCTACACCAATGTCCTTGAGTCAAATAGGGAAGTTTTACCCTGGTTTGACCCAAGAACAGATAGTAGACATTGTGAATGGGCTTGGTGAGCTCAAAGGTGCAAAGTGTGAGGACATTGATGTGGCCCGTGCTGCGTTGTACTTGGCATCAGATGATGCAAAGTTCATCTCGGGGCACAACTTGATTGTGGATGGAGGGTTTACTAGCTTCAAAAGTCTTGCATTCCCTTCTCCGAATCAAACTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01547	1299	4551	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001547s00040891.1	PF00106.20	adh_short	41	207	8.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.173
SRR1783600	control	0.167
SRR1783602	moderate drought stress	0.324
SRR1811619	moderate drought stress	0.320

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.612
DRR006520	Root Summer glycyrrhizin high producing strain	0.608
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.732
DRR006524	Root Summer glycyrrhizin low producing strain	0.733
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.904
SRR2868004	Drought Stress (root)	32.124
SRR2967015	Control (root)	29.768

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.377
SRR9715740	Leaf	1.449
SRR9715741	Leaf	2.034
SRR9715739	Root	1.382
SRR9715742	Root	1.059
SRR9715743	Root	0.920

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.856
SRR8749028	MeJA induced 9h	100.075
SRR8749029	MeJA induced 9h	65.894
SRR8749030	Uninduced	11.753
SRR8749031	Uninduced	18.845
SRR8749032	Uninduced	24.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.152
SRR8400027	Control - Root	2.565