Gene detail information of Glyur001546s00030190 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07360.1 | 4.00E-11 | CCCH-type zinc fingerfamily protein with RNA-binding domain |
| NR | XP_010457911.1 | 1.33E-10 | PREDICTED: zinc finger CCCH domain-containing protein 4-like isoform X3 [Camelina sativa] |
| Swissprot | tr|Q9LNV5|C3H4_ARATH | 3.00E-12 | Zinc finger CCCH domain-containing protein 4 |
| trEMBL | tr|I1M6C5|I1M6C5_SOYBN | 8.00E-11 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01546 | 59892 | 60863 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.827 |
| SRR1783600 | control | 2.676 |
| SRR1783602 | moderate drought stress | 2.468 |
| SRR1811619 | moderate drought stress | 2.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.007 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.855 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.685 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.505 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.277 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.632 |
| SRR2868004 | Drought Stress (root) | 0.781 |
| SRR2967015 | Control (root) | 0.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.830 |
| SRR9715740 | Leaf | 0.566 |
| SRR9715741 | Leaf | 1.409 |
| SRR9715739 | Root | 0.110 |
| SRR9715742 | Root | 0.631 |
| SRR9715743 | Root | 0.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.991 |
| SRR8749028 | MeJA induced 9h | 2.101 |
| SRR8749029 | MeJA induced 9h | 2.585 |
| SRR8749030 | Uninduced | 0.608 |
| SRR8749031 | Uninduced | 0.658 |
| SRR8749032 | Uninduced | 0.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.928 |
| SRR8400027 | Control - Root | 2.916 |