Gene detail

Gene detail information of Glyur001546s00030189.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13810.1	3.00E-146	AGD2-like defense response protein 1
NR	XP_003531555.1	0	PREDICTED: aminotransferase ALD1-like [Glycine max]
COG	YP_004651034.1	5.00E-129	LL-diaminopimelate aminotransferase [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|Q9ZQI7\|ALD1_ARATH	2.00E-180	Aminotransferase ALD1
trEMBL	tr\|I1KUE8\|I1KUE8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G19250.1}

Sequence

Transcript Sequence

>Glyur001546s00030189.1
ATGTACAAGACACCAATTTGCAGTTTTATGTTTAGTCCAAATGTTTTGCAGCCTAGGATGTTAGTGAACAGGTTTTCATGCACATTGAAGAATCAAAGAGTGAGAATTGGGCACTGCACGAAGGTACCCCGGAATGGAAACATGGAGAAACTGCAACATGGCTATTTATTCCCTGAGATTGAAAGACACGAGCTTATGCACTTAGAGAAGTATCCACACGCAAATGTGATAGACCTTGGAATTGGTGATACTACAGAACCCTTACCAACAATTGTAACAACAAGCATGGTTGATTTTGTGCGTGGCCTTTCAACAATAGAAGGTTATAAAGGATATGGACCTGAGCAAGGTGAAAAGGCCTTGAGGAAGGCAATTGCTGATGCATTCTACAAAGATCTAGGGATAAAACCCTCNGAGGTTTTTGTTTCAGATGGTGCACAATGCGATATTGCTCGTCTCCAGCTGCTTATGGGTCCCAATCTGAAGATAGCAGTACAGGATCCATCCTTTCCGGCCTACGTAGACTCAAGTGTCATAATTGGTCAGGCTGGCAAGTTTGTAGATAAAGCTGGGAAATATGAAAACATAGAATACATGACATGTGGACCTCAAACCAACTTCTTCCCAAATCTGTCTACCACTTCAAGGGCAGAACTTATTTTCTTTTGTTCTCCCAACAATCCCACTGTCCTAAATCAATCTTTGAAATTCCTGGTGCCAGAGAGGCATGTTGCAATTGAAGTGTCATCCTTCTCGAAATTCGCCGGCTTCACGGGGGTCCGCCTTGGTTGGACAGTTGTCCCCGAAGAACTCTTGTACTCAAACGGCTTCCCTGTTGTGCATGATTTCAACCGCATAATGTGCACCTGCTTCAATGGAGCATCCAACATTGCTCAGGCTGGTGGACTAGCATGCCTTTCCCCAGANGGTCTCAATGCCATGCAGTCCCTTGTTGACTACTACATGGAGAATGCAAGAATACTGGTCAATGCTTTGGCTTCTCTTGGTCTTACAGTTTATGGTGGTAAAAATGCACCCTATGTTTGGGTCCGTTTTCCTGGCTCAAATTCTTGGAATGTCTTTGCTGAAATTCTTNAGACGACACACATAATTACTGTTCCAGGCAGTGGTTTTGGTCCAGGTGGGGAAGAGTATATAAGAATTAGTGCTTTCGGCCGGAGAGATTCCATAATTGAAGCCTCAGAGAGACTCAAATACCTTTTCTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01546	53902	58777	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10206	E2.6.1.83	EC:2.6.1.83	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009089 lysine biosynthetic process via diaminopimelate

molecular_function

GO:0003824 catalytic activity

GO:0010285 L,L-diaminopimelate aminotransferase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001546s00030189.1	PF00155.16	Aminotran_1_2	75	229	4.40E-07
Glyur001546s00030189.1	PF00155.16	Aminotran_1_2	238	390	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.967
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.031
SRR2868004	Drought Stress (root)	0.816
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.051
SRR9715741	Leaf	0.106
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.121
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.002
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.008
SRR8400027	Control - Root	0.000