Gene detail

Gene detail information of Glyur001546s00030183.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64570.1	0	beta-D-xylosidase 4
NR	XP_003547598.1	0	PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Glycine max]
COG	YP_004464029.1	1.00E-128	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|A5JTQ2\|XYL1_MEDSV	0	Alpha-L-arabinofuranosidase (Precursor; Fragment)
trEMBL	tr\|I1MDV0\|I1MDV0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05720.1}

Sequence

Transcript Sequence

>Glyur001546s00030183.1
CTTGGCGCACGATGAGTCAGTGATCAAATAATTCATTCATTCTTTCGGTTGTTCTTTTGGCTCTCCGCCAAAAACAACAACCGCATTCAAAAAAGAGGCTTGGCTTCCATATTCTCCTCAATCTCACATCACGGGTCGCTAAAGAACAATGTGTTCTTAATACGGTTCTGCTTTCCTTTTCTCCACACTCAAAAATGGCACATTGCTCGATTTATTCATAGATAATACACATACCCTTTTGCTTCTTGTGTTTNTTTCCACCCCTTTTTGTTTTCGTGTTTTGTGTTTTCGAGGTCATAATTAATCATGGCCTGCACTGAAAACAGAGAACCGAAGGTCTCCTCTGTTTTCCTCTGTTTCTCATTATTCTGCGCCACAGTTTTGTTGAGTTGTTGTAACCGGGTNTGTGGCCAAACATCTGCCGTTTTTGCCTGTGATGTTGCCAAGAACCCGGCTTTGGCTGGTTTTGGGTTCTGTGACAAGTCATTATCGGTGGAGAACAGAGTTGAAGACCTTGTGAAGAGGCTTACATTGGAGGAGAAGATCGGGAACCTGGTGAACTCTGCAGCGGAAGTGAGTAGGCTTGGGATTCCAAAGTATGAGTGGTGGTCTGAGGCTCTTCATGGTGTCTCCAACATTGGCCCTGGGACCCACTTTTCCAGTGTGGTTCCCGGTGCCACCAGCTTCCCCATGCCCATTCTCACTGCAGCTTCTTTCAACACCACCCTGTTTCAAGCCATTGGAAGTGTGGTTTCAACGGAAGCCAGAGCAATGTACAATGTGGGGTTGGCTGGTTTGACATACTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGACAAGAGACACCAGGGGAAGACCCTTTGCTAAGTAGCAAATATGCAACAGGATATGTGAAGGGTCTGCAACAAACTGATGATGGAGACACCAACAAGCTCAAGGTTGCTGCTTGTTGCAAACACTACACAGCCTATGATGTGGATAACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTGACACAGCAAGATATGGATGACACATTCCAACCTCCATTTGAGAGCTGTGTGATTGATGGGAATGTTGCCAGTGTCATGTGTTCCTACAACCAGGTTAATGGAAAACCAACCTGTGCNGACCCTGACCTCCTTAAGGGGGTTATCCGAGGCAAATGGAAATTAAATGGATATATAGTTTCTGACTGTGACTCGGTTGAAGTGCTTTTCAAAGACCAGCATTACACCAAGACTCCTGAAGAAGCTGCAGCCAAATCCATACTGGCAGGGCTAGATTTGAACTGTGGAGATTACCTTGGCAAATATACACAAGGGGCTGTCAAGCAAGGGCTTGTTGATGAGGCATCCATTAACAATGCTATCTCCAACAATTTCGCCACATTGATGCGTCTTGGTTTCTATGATGGTGATCCAAGCAAGCAACCTTACGGAAAACTTGGTCCAAAGGATGTGTGCACTTCAGAGAATAGGGAACTCGCGCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAATAGCCCAGGATCACTGCCTCTAAATGCCAAAGCCATTAAATCATTGGCAGTTATAGGGCCCAATGCTAACGCTACTAGGGTCATGATTGGAAACTATGAAGCCTTAGTTCCCACAAGCTATGCTCCTGGCTGTCCTGATGTGCAATGCGCCAATGCCCAGCTAGATGATGCAGCGAAGATTGCAGCCTCTGCAGATGCAACCGTCATTGTAGTGGGTGCAAGTCTAGCTATAGAGGCAGAAAGTCTTGACAGAGTTAACATTCTTCTTCCGGGACAGCAGCAACTACTAGTGAATGAAGTTGCAAATGTATCCAAGGGGCCTGTNATTCTTGTGATAATGTCTGGAGGAGGCATGGATGTGTCCTTTGCTAAAACTAATGATAAGATCACAAGCATTTTGTGGGTTGGCTACCCCGGTGAAGCTGGTGGAAGGCTACCTATGACATGGTATCCACAATCATATGTAGAAAAGGTACCAATGACAAACATGAACATGAGGGCAGATCCTGCCACAGGTTACCCTGGTAGAACTTACAGATTTTACAAAGGGGAAACTGTTTTCTCATTTGGAGATGGAATGAGCTTCGCCAGTGTGGAGCACAAAATAGTCAAAGCANCACAGTTGGTGTCTGTTCCCCTAGCAGAGGATCATGAATGCCGTTCCACAGAATGCAAGTCACTTGANGTTGCTGATGAGCATTGTCAAAACTTGGCCTTTGATATTCACCTTAGTGTCAAGAACATGGGGAAAATGAGCAGTAGCCACACAGTTTTATTGTTCTTTACTCCTCCAGCTGTGCACAATGCTCCTCAGAAACACTTGTTGGGTTTTGAGAAGGTGCACTTGGTAGGAAAATCAGAATCACATGTTAGGTTCAAGGTAGANGTTTGCAAGGATTTGAGTGTGGTTGATGAACTTGGCAACAGGAAAGTTCCCTTGGGGGAGCACATGCTTCATGTGGGAAACTTGAAGCATCCATTGGGGGTGAGGATTTGAAACAAAAGTCTTCAAATCCTCTGCATTGAGTTTTTATTTCCCTTTTTCACCATTGGTTTCCTTAAAAGAATTTTTGTAGGAGACCGGAAATAAGTTTTAGGTAAACTGTAACAAAATTATCTGATTTGTACCATTGTATTCAAATCACAAATTTGAAATTAAAATCTAGTTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01546	4291	9064	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15920	XYL4	EC:3.2.1.37	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001546s00030183.1	PF00933.16	Glyco_hydro_3	79	365	2.50E-63
Glyur001546s00030183.1	PF01915.17	Glyco_hydro_3_C	411	610	7.50E-25
Glyur001546s00030183.1	PF14310.1	Fn3-like	671	738	4.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.056
SRR1783600	control	4.220
SRR1783602	moderate drought stress	2.699
SRR1811619	moderate drought stress	2.689

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.974
DRR006520	Root Summer glycyrrhizin high producing strain	5.981
DRR006521	Root Winter glycyrrhizin high producing strain	0.778
DRR006522	Root Winter glycyrrhizin high producing strain	0.779
DRR006523	Root Summer glycyrrhizin low producing strain	2.794
DRR006524	Root Summer glycyrrhizin low producing strain	2.669
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.116
SRR2868004	Drought Stress (root)	17.782
SRR2967015	Control (root)	23.197

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.873
SRR9715740	Leaf	1.913
SRR9715741	Leaf	2.738
SRR9715739	Root	4.764
SRR9715742	Root	3.529
SRR9715743	Root	3.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.404
SRR8749028	MeJA induced 9h	3.996
SRR8749029	MeJA induced 9h	0.690
SRR8749030	Uninduced	2.277
SRR8749031	Uninduced	0.084
SRR8749032	Uninduced	1.181

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.524
SRR8400027	Control - Root	16.784