Gene detail information of Glyur001544s00035570.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003521381.1 | 2.14E-30 | PREDICTED: DNA-binding protein S1FA3 [Glycine max] |
| Swissprot | tr|Q7XLX6|S1FA2_ORYSJ | 5.00E-16 | DNA-binding protein S1FA2 |
| trEMBL | tr|C6SX22|C6SX22_SOYBN | 8.00E-31 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G33640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01544 | 58784 | 61373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | S1Fa-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001544s00035570.1 | PF04689.8 | S1FA | 26 | 89 | 9.40E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.292 |
| SRR1783600 | control | 30.069 |
| SRR1783602 | moderate drought stress | 30.204 |
| SRR1811619 | moderate drought stress | 30.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.895 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.960 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.312 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.774 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.729 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.765 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.056 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.906 |
| SRR2868004 | Drought Stress (root) | 33.719 |
| SRR2967015 | Control (root) | 32.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.512 |
| SRR9715740 | Leaf | 22.808 |
| SRR9715741 | Leaf | 22.655 |
| SRR9715739 | Root | 18.753 |
| SRR9715742 | Root | 25.644 |
| SRR9715743 | Root | 22.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.475 |
| SRR8749028 | MeJA induced 9h | 37.788 |
| SRR8749029 | MeJA induced 9h | 38.545 |
| SRR8749030 | Uninduced | 31.392 |
| SRR8749031 | Uninduced | 32.728 |
| SRR8749032 | Uninduced | 35.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.601 |
| SRR8400027 | Control - Root | 92.338 |