Gene detail

Gene detail information of Glyur001544s00035565.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03150.1	7.00E-88	C2H2-like zinc finger protein
NR	KHN48306.1	0	Zinc finger protein JACKDAW [Glycine soja]
Swissprot	tr\|Q700D2\|IDD10_ARATH	1.00E-137	Zinc finger protein JACKDAW
trEMBL	tr\|K7LZN2\|K7LZN2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G20231.2}

Sequence

Transcript Sequence

>Glyur001544s00035565.1
CTGGAATATTATTATTATTATTATCTATAGCCATCCATCTTATATGGTTAAATAGGCTTTTGGTTTTATCCTGAGAGAGAAGTGAAATCAAACAAACAAGAAACCAGATCTCCAGTTGGAAGCTCTTGCATTAGTATTATATAGTTTTCTTCTTTTCAGGGCTTTAAATACTTTTGGTTCGATTCAAGTTTCGTTTATGGCTTTTTCTTGTCTTTTGGCAGAACGATACATACATCATGCACACACACATAGCAGTGATAGCACCTAACCACTCTCTCCTTAAAGAATTTTGGGGGTACCCTCCAAAAAGAATTTATGTTCCATTTCTTGGCTTTTGCTACTCCAAAAAACCATTGTAGTTTTCTTCCTTGTACTGTCTGAAAAAAAAACCTTTGAAAGTTAGCTGTTTGCTTCTTCTGCTCTCTCTCTGCTTCTTCTGCTAACCCATTACTATATAGCTTCTTCATCAAACCCCTTTATCNTTTTTCTTTCTTCTAATATGCAAATGATGCCCGGTGACCCCTTTTCACTATCAACTTCAATCGGAGGGTTTAGTNCTCAACAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTTCAGTCACCAACAAGAAAAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCAGAGGTGATTGCTCTGTCACCAAAGACACTTATGGCGACNAACAGGTTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGACCAAAACCTTCAACTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGAACGAATAAGGAAGTGAGGAAGAAGGTTTATATCTGCCCTGAGAANACTTGTGTCCACCACGACCCTGCACGAGCGCTAGGCGATCTCACGGGTATAAAAAAGCACTTCAGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAATACGCGGTCCAATCTGATTGGAAAGCTCACACCAAAACATGCGGCACAAGGGAATACAAGTGTGACTGTGGCACCCTCTTCTCCAGGAAAGACAGTTTCATTACACACAGAGCATTCTGTGATGCATTGGCTGAAGAGAGTGCAAGGCTCACCTCAGTTACTACTACTACAACGAATCTAAATTTCAAGAACGAAGAGAGTGGTGCTTCTGTGATGGGTANTTCACAACCACATGGACAACTAATTGCTCAAAATGTAGGTGGNAATAATATTCCACAGTTTGGTCCACATGGGTTTCGTTTAGATTTCAACAACAACAACAATTTGATGGGTTCAACTTCAGAACAACAAATTAGGCCAAGCTTGTCACTTTGGTTGAACCAGGGGAATATTAATAATCCACAGATGAACGATGTGGGACCCAATCCAGGGCTCTATGCTTCTTCTTCAGGTTTGCATCATGAGTTTGTGCAAATGGCACAGACTAATTCATCGGTGTTATCTAATTTTGGAGTTTCCAATTCAACAAACACAGCAAGCCTTTCTCTATCATCATCAATTCCCATTNGGAAAAGAGGAGAAAGTGTAGAATTGGCTTCTCTTTATGCAGATCAGAGTCAAAACAAGCAATTGAATTCAAAGCCTGCTTCACCTATGTCAGCAACTGCACTTCTGCAGAAAGCAGCACAAATGGGTTCCACTAGAAGCACCACCACCACCACCACCAACAACAACAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTAATGACCTCATCAATACCCTCTTCACAAACTACTAATAGTAATAATAATGTACATGCCTTTCAGCAGCAACCAGAGAATAATTTCAGCTCATTGATGAATTCCTCAAACGGTTTTGATCATCATCAACTTGTGATGCAAAGTACTACTACCAATGGGCAACAACAATTGAAGCTCCTCCATTCAAATGCTGTGGAACATAACAATAATTTGACAAGAGATTTTCTTGGTGTGAGTGGAGGAGGAGGAAGAGGAGGTGGTGGTGGAACTCAGTTTCTACCACAAGAGTTGGCAAAGTTTGCTTCTTCCATTGGTTCATCAATGGGGTTGAACCAATTCACAGGGAATCAGCAGTAAAATTGAAATATGCCATATATTTCTGAGAGCCAATACGCGATCTGGATCCTCTACGGCTGCTGCTGGAGAGGCAGCACAACTCTTCATCCCTCTATTTCTCTTTTAATTTCTTTCTCTCTCGTCATTACATCCGTTCATGTCACGTGTTATGGACCATTGTAAGATAACAACATCAATTATAAAATTTGAAGGTTCATCATCAATCATCAAGGTTTTTGGTGTTTGGTGAGAACGTGTTAGTGTACTATACCTCTTCTGAAGGTGAAGAACGGTTCAGATAAGGCAGTGTGGAGGACCCACACACTGCATGTCTTTGGTGACTGGCCATGCATGTTCTCTTTCTTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01544	21356	24293	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001544s00035565.1	PF00096.21	zf-C2H2	69	91	0.0047

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.027
SRR1783600	control	16.544
SRR1783602	moderate drought stress	18.887
SRR1811619	moderate drought stress	18.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.542
DRR006520	Root Summer glycyrrhizin high producing strain	11.994
DRR006521	Root Winter glycyrrhizin high producing strain	2.343
DRR006522	Root Winter glycyrrhizin high producing strain	2.329
DRR006523	Root Summer glycyrrhizin low producing strain	10.185
DRR006524	Root Summer glycyrrhizin low producing strain	10.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.544

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.518
SRR2868004	Drought Stress (root)	6.742
SRR2967015	Control (root)	7.138

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.375
SRR9715740	Leaf	2.959
SRR9715741	Leaf	4.015
SRR9715739	Root	6.648
SRR9715742	Root	12.746
SRR9715743	Root	11.541

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.015
SRR8749028	MeJA induced 9h	0.014
SRR8749029	MeJA induced 9h	0.031
SRR8749030	Uninduced	0.007
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.887
SRR8400027	Control - Root	8.559