Gene detail information of Glyur001542s00036585 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67260.1 | 5.00E-73 | CYCLIN D3;2 |
| NR | KHN22485.1 | 1.44E-148 | Cyclin-D3-1 [Glycine soja] |
| Swissprot | tr|Q9FGQ7|CCD32_ARATH | 2.00E-87 | Cyclin-D3-2 |
| trEMBL | tr|C6TLH0|C6TLH0_SOYBN | 7.00E-148 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23762.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01542 | 17009 | 18791 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001542s00036585.1 | PF00134.18 | Cyclin_N | 80 | 208 | 2.50E-27 |
| Glyur001542s00036585.1 | PF02984.14 | Cyclin_C | 210 | 318 | 5.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.982 |
| SRR1783600 | control | 9.951 |
| SRR1783602 | moderate drought stress | 7.930 |
| SRR1811619 | moderate drought stress | 7.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.075 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.290 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.314 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.534 |
| SRR2868004 | Drought Stress (root) | 8.139 |
| SRR2967015 | Control (root) | 8.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.522 |
| SRR9715740 | Leaf | 0.604 |
| SRR9715741 | Leaf | 0.351 |
| SRR9715739 | Root | 3.040 |
| SRR9715742 | Root | 3.068 |
| SRR9715743 | Root | 2.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.205 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.714 |
| SRR8400027 | Control - Root | 13.456 |