Gene detail

Gene detail information of Glyur001541s00033558.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23090.2	1.00E-69	nuclear factor Y, subunit B13
NR	XP_004488351.1	3.97E-106	PREDICTED: protein Dr1 homolog [Cicer arietinum]
Swissprot	tr\|P49592\|NC2B_ARATH	4.00E-88	Protein Dr1 homolog
trEMBL	tr\|I3S9B6\|I3S9B6_MEDTR	4.00E-105	Uncharacterized protein {ECO:0000313\|EMBL:AFK36858.1}

Sequence

Transcript Sequence

>Glyur001541s00033558.1
GACGGAAGCAGGAACTTTGTGGTGTCGTCCTTATCCATCCAGTGCAAAGAAAAAAAAGCATCACCATCATCGTCATCCACCCCATGTTCTTGTTTTCATAAATGCATACAATAACATCATCAGCCATGTCCAAGTCCAAGTCCATGTCCATGTCCATGTCCATCATCTCCATCTCTTCCCCTTTCTTCCTTCAACTCCGATCCTCAATCAGTTGACTCTTCCTCCCTCTGTTATTCCAATCCGTGAGTGAGTCCTCTCTTTCTTCTTCACAACCCTCTCAGATCCGCCACCACTAATTCCCTTCTATTCGGTTTTTAGGTCGTAAAACGATGGAGCCCATGGACATCGTTGCAAAAACTAAGGAAGATGCTTCCCTCCCTAAAGCAACAATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTCGCTAGAGATGCCCAGGATTTATTGATCGAGTGCTGTGTAGAGTTCATAAACCTCGTCTCATCAGAGTCCAATGAAGTATGCAACAGAGAGGAAAGAAGGACGATTGCACCTGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATNGAGGATGTTTATGCAGCATATGAACAGCACAAGCTGGAGACAGTGCAGGACTCTTTAAAAGGTGCCAAGTGGAGCGCTGGAGCTGAGATGACGGAGGAAGAAGCATTGGCTGAGCAACAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGGCCATTACTTCGAATCAGCCAGATGCTGACCAAAGTTTAGAGAGCTAACTTTAGGGCCTTTATTTTCTTGAAGCATAGGCAAGCATTTCTGACTCTTCCCTATGCGATAATTTAGCTCGATTTTGCACAAATACTCATTCACTTGTTTGCTGGCCCATGTGGATGTGCTCGCCATTTGTGTTCTTTTAGTGATCCATATTTGTAAGTTAATGTAATTAATGGAGTTCATTTAATCCCTCGTCTATTTAGAATTGTATGTAAATTATTTCATTTAGTTGTATCTTCTACACTAATAGCTCTTGGCTTAATTATGACAATAGTGACTATATATGATTGTGACAATTTATATATAAAAACCATTAAGGTTTCTCAAACAGCAATGAAGNTTCCATAACAGTTCATCATTCATATCCTCAGCTCATGAATGTCTTCTCGAGTCTAATGGCCAAAGAAATCCTCGAACTTGTGTCAATTATATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01541	11686	19276	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001541s00033558.1	PF00808.18	CBFD_NFYB_HMF	14	79	3.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.258
SRR1783600	control	68.875
SRR1783602	moderate drought stress	77.283
SRR1811619	moderate drought stress	77.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	59.726
DRR006520	Root Summer glycyrrhizin high producing strain	59.211
DRR006521	Root Winter glycyrrhizin high producing strain	61.347
DRR006522	Root Winter glycyrrhizin high producing strain	59.797
DRR006523	Root Summer glycyrrhizin low producing strain	94.060
DRR006524	Root Summer glycyrrhizin low producing strain	93.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.109
SRR2868004	Drought Stress (root)	83.021
SRR2967015	Control (root)	101.678

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.857
SRR9715740	Leaf	64.687
SRR9715741	Leaf	86.289
SRR9715739	Root	34.793
SRR9715742	Root	39.564
SRR9715743	Root	40.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	127.908
SRR8749028	MeJA induced 9h	184.542
SRR8749029	MeJA induced 9h	176.986
SRR8749030	Uninduced	215.900
SRR8749031	Uninduced	234.104
SRR8749032	Uninduced	228.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.261
SRR8400027	Control - Root	60.221