Gene detail information of Glyur001541s00033557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23100.1 | 2.00E-76 | Protein of unknown function, DUF617 |
| NR | XP_007138351.1 | 8.23E-156 | hypothetical protein PHAVU_009G201400g [Phaseolus vulgaris] |
| Swissprot | tr|O22227|MIZ1_ARATH | 1.00E-59 | Protein MIZU-KUSSEI 1 |
| trEMBL | tr|V7AYG1|V7AYG1_PHAVU | 3.00E-156 | Uncharacterized protein {ECO:0000313|EMBL:ESW10345.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01541 | 9469 | 10284 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001541s00033557.1 | PF04759.8 | DUF617 | 99 | 271 | 4.40E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.581 |
| SRR1783600 | control | 2.685 |
| SRR1783602 | moderate drought stress | 2.228 |
| SRR1811619 | moderate drought stress | 2.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.056 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.217 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.658 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.338 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.567 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.085 |
| SRR2868004 | Drought Stress (root) | 4.884 |
| SRR2967015 | Control (root) | 4.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.864 |
| SRR9715740 | Leaf | 0.517 |
| SRR9715741 | Leaf | 1.704 |
| SRR9715739 | Root | 1.871 |
| SRR9715742 | Root | 4.611 |
| SRR9715743 | Root | 4.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.130 |
| SRR8749028 | MeJA induced 9h | 26.459 |
| SRR8749029 | MeJA induced 9h | 20.908 |
| SRR8749030 | Uninduced | 37.565 |
| SRR8749031 | Uninduced | 65.596 |
| SRR8749032 | Uninduced | 82.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.941 |
| SRR8400027 | Control - Root | 6.638 |